BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0030.p (247 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUD2.1 D8IUD2_HERSS ABC-type sugar transport system, permease ... 360 7e-98 F1VVZ7.1 F1VVZ7_9BURK Ribose ABC transport system, permease prot... 349 2e-94 B5WSB4.1 B5WSB4_9BURK Monosaccharide-transporting ATPase EC=3.6.... 299 2e-79 A2WA94.1 A2WA94_9BURK Ribose/xylose/arabinose/galactoside ABC-ty... 298 3e-79 D5W8J8.1 D5W8J8_BURSC Inner-membrane translocator 298 3e-79 >D8IUD2.1 D8IUD2_HERSS ABC-type sugar transport system, permease component protein Length = 328 Score = 360 bits (925), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 180/238 (75%), Positives = 208/238 (87%), Gaps = 1/238 (0%) Query: 9 QTKIMTHPNRTFSVYGLSAVKNYLGLIGALLAMCVLFSFLSENFLTLATFSTLSNDIPTL 68 QT T + Y L+ KNYLGL+ ALLAMCV+F+FLSENFL+ ATF TLSNDIP L Sbjct: 2 QTSSSTPAASRQAAY-LAGFKNYLGLMAALLAMCVMFAFLSENFLSAATFITLSNDIPPL 60 Query: 69 VVMAVGMTFVLIVGGIDLSVGSVMALAASILSMAMVRWGWPLFAAGLLGILVASLCGMLT 128 VVM+VGMTF+LI+GGIDLSVGSVMALAAS+LSMAMVRWGWPL+AA LG++VA+LCG LT Sbjct: 61 VVMSVGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLT 120 Query: 129 GLISVGWRIPSFIVSLGVLEMARGMAYQVTNSRTEYIGSAVDGISSPIFLGLSPAFIASI 188 G++SV WRIPSFIVSLGVLE+ARG+AYQVTNSRTEYIGSAVD ISSPI G+SPAF+++I Sbjct: 121 GMVSVHWRIPSFIVSLGVLEIARGLAYQVTNSRTEYIGSAVDVISSPILFGMSPAFLSAI 180 Query: 189 AVVVIGHLVLTRTVLGRHWIGIGTNEEAVRLAGINPRPSKILVFALMGLLAGVGALFQ 246 A+V+I LVLTRTVLGR+WIGIGTNEEAVRL+G+NP PSKIL FALMG LAG+ ALFQ Sbjct: 181 AIVIIAQLVLTRTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQ 238 >F1VVZ7.1 F1VVZ7_9BURK Ribose ABC transport system, permease protein RbsC Length = 319 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/222 (76%), Positives = 203/222 (91%) Query: 25 LSAVKNYLGLIGALLAMCVLFSFLSENFLTLATFSTLSNDIPTLVVMAVGMTFVLIVGGI 84 L+ +KNY GL+G L+A+CVLFSFLS+ F TL T TL+ND+PTL+VMAVGMTFVLI+GGI Sbjct: 10 LAGLKNYAGLLGTLVALCVLFSFLSDYFFTLNTLRTLANDVPTLLVMAVGMTFVLIIGGI 69 Query: 85 DLSVGSVMALAASILSMAMVRWGWPLFAAGLLGILVASLCGMLTGLISVGWRIPSFIVSL 144 DLSVGSVMALAASI+S+AMV WGWP++AAG+LG+L A+ GM+TGLISVGWR+PSFIVSL Sbjct: 70 DLSVGSVMALAASIMSLAMVHWGWPVYAAGMLGMLAAASLGMVTGLISVGWRVPSFIVSL 129 Query: 145 GVLEMARGMAYQVTNSRTEYIGSAVDGISSPIFLGLSPAFIASIAVVVIGHLVLTRTVLG 204 G+LE+ARGMAY+VTNSRTEYIG V GIS+P+F+G+SPAF+A+I +V+ G LVLTRTVLG Sbjct: 130 GMLEIARGMAYEVTNSRTEYIGGIVAGISAPVFMGMSPAFMAAILIVIAGQLVLTRTVLG 189 Query: 205 RHWIGIGTNEEAVRLAGINPRPSKILVFALMGLLAGVGALFQ 246 R WIGIGTNEEAVRL+GI+PRPSK+LVFALMGLLAGVGALFQ Sbjct: 190 RLWIGIGTNEEAVRLSGIDPRPSKVLVFALMGLLAGVGALFQ 231 >B5WSB4.1 B5WSB4_9BURK Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 345 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/218 (68%), Positives = 182/218 (83%) Query: 29 KNYLGLIGALLAMCVLFSFLSENFLTLATFSTLSNDIPTLVVMAVGMTFVLIVGGIDLSV 88 NYLGL GALLAM VLFS LS +FLT TFST++N IP LVVM+VGMTFVLI+ GIDLSV Sbjct: 40 SNYLGLAGALLAMIVLFSLLSSHFLTYDTFSTIANQIPDLVVMSVGMTFVLIIAGIDLSV 99 Query: 89 GSVMALAASILSMAMVRWGWPLFAAGLLGILVASLCGMLTGLISVGWRIPSFIVSLGVLE 148 GSV+AL AS++S+ ++WGW A LLG+ VA+L G +TG ++VGWRIPSFIVSLGVLE Sbjct: 100 GSVLALGASVVSVVTLKWGWGPAAGALLGVAVAALTGTVTGAVTVGWRIPSFIVSLGVLE 159 Query: 149 MARGMAYQVTNSRTEYIGSAVDGISSPIFLGLSPAFIASIAVVVIGHLVLTRTVLGRHWI 208 ARG+AYQ+TNSRT YIG A D +S+PI LG+SPAF+ ++AV+VI LVLTRTV GR+ + Sbjct: 160 AARGLAYQMTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMVIAQLVLTRTVFGRYLV 219 Query: 209 GIGTNEEAVRLAGINPRPSKILVFALMGLLAGVGALFQ 246 GIGTNEEAVRLAG+NPRP K++VFALMG L+G+ ALFQ Sbjct: 220 GIGTNEEAVRLAGVNPRPYKVIVFALMGALSGLAALFQ 257 >A2WA94.1 A2WA94_9BURK Ribose/xylose/arabinose/galactoside ABC-type transport systems permease component Length = 339 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 156/246 (63%), Positives = 190/246 (77%), Gaps = 1/246 (0%) Query: 1 VTTTTQAKQTKIMTHPNRTFSVYGLSAVKNYLGLIGALLAMCVLFSFLSENFLTLATFST 60 V+ T Q + RT S L V NYLGL GAL+AM LFS LS +FLT TFST Sbjct: 6 VSPTDAGAQQTVTGRRARTLSGTRL-GVSNYLGLAGALVAMIALFSALSSHFLTYDTFST 64 Query: 61 LSNDIPTLVVMAVGMTFVLIVGGIDLSVGSVMALAASILSMAMVRWGWPLFAAGLLGILV 120 ++N IP LVVM+VGMTFVLI+ GIDLSVGSV+ALAAS++S+A ++W W A L+GI V Sbjct: 65 IANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAV 124 Query: 121 ASLCGMLTGLISVGWRIPSFIVSLGVLEMARGMAYQVTNSRTEYIGSAVDGISSPIFLGL 180 A++ G LTG ++VGWRIPSFIVSLGVLE ARG+AYQ+TNSRT YIG A D +S+PI LG+ Sbjct: 125 ATVTGSLTGAVTVGWRIPSFIVSLGVLEAARGLAYQLTNSRTAYIGDAFDILSNPIALGI 184 Query: 181 SPAFIASIAVVVIGHLVLTRTVLGRHWIGIGTNEEAVRLAGINPRPSKILVFALMGLLAG 240 SPAF+ ++AV++ VLTRTV GR+ +GIGTNEEAVRLAG+NPRP KILVFALMG LAG Sbjct: 185 SPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMGALAG 244 Query: 241 VGALFQ 246 + +LFQ Sbjct: 245 LASLFQ 250 >D5W8J8.1 D5W8J8_BURSC Inner-membrane translocator Length = 359 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 149/218 (68%), Positives = 182/218 (83%) Query: 29 KNYLGLIGALLAMCVLFSFLSENFLTLATFSTLSNDIPTLVVMAVGMTFVLIVGGIDLSV 88 NYLGL GALLAM VLFS LS +FLT TFST++N IP LVVM+VGMTFVLI+ GIDLSV Sbjct: 54 SNYLGLAGALLAMIVLFSLLSSHFLTYDTFSTIANQIPDLVVMSVGMTFVLIIAGIDLSV 113 Query: 89 GSVMALAASILSMAMVRWGWPLFAAGLLGILVASLCGMLTGLISVGWRIPSFIVSLGVLE 148 GSV+AL AS++S+ ++WGW A LLG+ VA+L G +TG ++VGWRIPSFIVSLGVLE Sbjct: 114 GSVLALGASVVSVVTLKWGWGPAAGALLGVAVAALTGTVTGAVTVGWRIPSFIVSLGVLE 173 Query: 149 MARGMAYQVTNSRTEYIGSAVDGISSPIFLGLSPAFIASIAVVVIGHLVLTRTVLGRHWI 208 ARG+AYQ+TNSRT YIG A D +S+PI LG+SPAF+ ++AV+VI LVLTRTV GR+ + Sbjct: 174 AARGLAYQMTNSRTAYIGDAFDFLSNPIALGISPAFLVAVAVMVIAQLVLTRTVFGRYLV 233 Query: 209 GIGTNEEAVRLAGINPRPSKILVFALMGLLAGVGALFQ 246 GIGTNEEAVRLAG+NPRP K++VFA+MG L+G+ ALFQ Sbjct: 234 GIGTNEEAVRLAGVNPRPYKVIVFAVMGALSGLAALFQ 271