BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0029.p (256 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1VVZ6.1 F1VVZ6_9BURK Ribose operon repressor 339 2e-91 D8IUD3.1 D8IUD3_HERSS Transcription regulator DNA-binding repres... 328 6e-88 C6BFI1.1 C6BFI1_RALP1 Transcriptional regulator, LacI family 258 5e-67 E2SZD6.1 E2SZD6_9RALS Ribose operon repressor 258 5e-67 B2U8T5.1 B2U8T5_RALPJ Transcriptional regulator, LacI family 257 1e-66 >F1VVZ6.1 F1VVZ6_9BURK Ribose operon repressor Length = 332 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 176/254 (69%), Positives = 201/254 (79%), Gaps = 2/254 (0%) Query: 1 VARGIEDSCYQAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLIVATLAQTDGELLRKMK 60 VARGIED CY AGYSVILCN DDPA+QR+YLNVLL KRCDGLI+A LA DGELL K Sbjct: 77 VARGIEDHCYGAGYSVILCNFGDDPARQRNYLNVLLGKRCDGLIMAALAPADGELLHTKK 136 Query: 61 VPTVLLDRAPKDMAIDLVAVDNAAGGVLAAEHLLALGRRRIACIGGPESLDISAERIAGL 120 +P VLLDRAP+ + D+V VDN AGGVLAA+HLLALGRRRIACIGGP+ + +S R+ GL Sbjct: 137 IPVVLLDRAPRGQSFDVVDVDNVAGGVLAAQHLLALGRRRIACIGGPQEITLSRLRLDGL 196 Query: 121 RRKLQTAGVAIAPGLLAYADFTSAGGY--AAARALLSVAQPPDAIFCCNDLMAIGALRAA 178 R L AG+ +AP L YADFTS GGY A A L AQ PDAIFCCNDLMAIG LRAA Sbjct: 197 RATLAEAGLPLAPALCRYADFTSMGGYQQARALLALPAAQRPDAIFCCNDLMAIGVLRAA 256 Query: 179 AERGIDVPDALSVIGFDDIDLASFVHPPLTSVSQNTRTLGQLTAQCLLERIADPTRPVQR 238 AE GI VP AL+V+GFDDIDLA FV+P L+SV+QNTR LGQLTAQCLL RIA+P P+Q+ Sbjct: 257 AEAGIAVPQALAVVGFDDIDLARFVYPALSSVAQNTRALGQLTAQCLLARIANPDLPLQQ 316 Query: 239 KTITPQLHVRGSTV 252 T+TP LHVR S++ Sbjct: 317 HTMTPALHVRESSL 330 >D8IUD3.1 D8IUD3_HERSS Transcription regulator DNA-binding repressor protein Length = 337 Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 165/254 (64%), Positives = 194/254 (76%), Gaps = 3/254 (1%) Query: 1 VARGIEDSCYQAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLIVATLAQTDGELLRKMK 60 +ARGIED CY AGYSVILCNSDDDP KQRDYL VL TK CDGLI+ATL Q D K+ Sbjct: 77 LARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLIIATLNQADLNPAGKLD 136 Query: 61 VPTVLLDRAPKDMAIDLVAVDNAAGGVLAAEHLLALGRRRIACIGGPESLDISAERIAGL 120 +PTVLLDRAPK++ IDLV+ DNA GG LAA HLL L R R+ACI GP+ L++S ER+ G Sbjct: 137 IPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACIAGPDGLELSDERVRGF 196 Query: 121 RRKLQTAGVAIAPGLLAYADFTSAGGYAAARALLS---VAQPPDAIFCCNDLMAIGALRA 177 R+ L+ G+A+A L +ADF+ GGY AA LL Q PDAIFCCND+MAIG LRA Sbjct: 197 RQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPDAIFCCNDMMAIGVLRA 256 Query: 178 AAERGIDVPDALSVIGFDDIDLASFVHPPLTSVSQNTRTLGQLTAQCLLERIADPTRPVQ 237 A E I+VP LSV+GFDDI+LA FVHPPLT+V+QNTR LG LTAQ LLERIADP+ P + Sbjct: 257 AGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLTAQFLLERIADPSLPAR 316 Query: 238 RKTITPQLHVRGST 251 R+T+ PQL +RGST Sbjct: 317 RETVAPQLQLRGST 330 >C6BFI1.1 C6BFI1_RALP1 Transcriptional regulator, LacI family Length = 346 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 141/260 (54%), Positives = 175/260 (67%), Gaps = 9/260 (3%) Query: 1 VARGIEDSCYQAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLIVATLAQTDG--ELLRK 58 +ARGIED C AGYSVILCNSDDDP KQRDYL VL+ KR DG+IV++ E L + Sbjct: 77 LARGIEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGIIVSSAGPDTALIEALGE 136 Query: 59 MKVPTVLLDRAPKDMAIDLVAVDNAAGGVLAAEHLLALGRRRIACIGGPESLDISAERIA 118 +P V++DR + + D V VD+ G +A +HLL LG RRIACI GP SL ++AER+A Sbjct: 137 SALPIVMVDRPTEGIQADQVQVDHEEGAYMATKHLLDLGHRRIACISGPSSLSVTAERLA 196 Query: 119 GLRRKLQTAGVAIAPGLLAYADFTSAGGYAAARALLSVAQPPDAIFCCNDLMAIGALRAA 178 G R L+ AGV A +A DFTS GGY AAR LL+ + P AIF NDLM IGALRAA Sbjct: 197 GFHRALREAGVPEATVRIAEGDFTSPGGYRAARQLLTEGEMPTAIFAGNDLMGIGALRAA 256 Query: 179 AERGIDVPDALSVIGFDDIDLASFVHPPLTSVSQNTRTLGQLTAQCLLERIADPT--RPV 236 AE GI VP ALSVIGFDDI+L+ +V+P L++V Q+ R LG+ TAQ LLE + D PV Sbjct: 257 AELGIPVPKALSVIGFDDIELSRYVYPALSTVGQSIRQLGETTAQTLLEHLGDNALRHPV 316 Query: 237 Q-----RKTITPQLHVRGST 251 + R + P+L +R ST Sbjct: 317 EEPRARRIVLPPRLSLREST 336 >E2SZD6.1 E2SZD6_9RALS Ribose operon repressor Length = 346 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 141/260 (54%), Positives = 175/260 (67%), Gaps = 9/260 (3%) Query: 1 VARGIEDSCYQAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLIVATLAQTDG--ELLRK 58 +ARGIED C AGYSVILCNSDDDP KQRDYL VL+ KR DG+IV++ E L + Sbjct: 77 LARGIEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGIIVSSAGPDTALIEALGE 136 Query: 59 MKVPTVLLDRAPKDMAIDLVAVDNAAGGVLAAEHLLALGRRRIACIGGPESLDISAERIA 118 +P V++DR + + D V VD+ G +A +HLL LG RRIACI GP SL ++AER+A Sbjct: 137 SALPIVMVDRPTEGIQADQVQVDHEEGAYMATKHLLDLGHRRIACISGPSSLSVTAERLA 196 Query: 119 GLRRKLQTAGVAIAPGLLAYADFTSAGGYAAARALLSVAQPPDAIFCCNDLMAIGALRAA 178 G R L+ AGV A +A DFTS GGY AAR LL+ + P AIF NDLM IGALRAA Sbjct: 197 GFHRALREAGVPEATVRIAEGDFTSPGGYRAARQLLTEGEMPTAIFAGNDLMGIGALRAA 256 Query: 179 AERGIDVPDALSVIGFDDIDLASFVHPPLTSVSQNTRTLGQLTAQCLLERIADPT--RPV 236 AE GI VP ALSVIGFDDI+L+ +V+P L++V Q+ R LG+ TAQ LLE + D PV Sbjct: 257 AELGIPVPKALSVIGFDDIELSRYVYPALSTVGQSIRQLGETTAQTLLEHLGDNALRHPV 316 Query: 237 Q-----RKTITPQLHVRGST 251 + R + P+L +R ST Sbjct: 317 EEPRARRIVLPPRLSLREST 336 >B2U8T5.1 B2U8T5_RALPJ Transcriptional regulator, LacI family Length = 346 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/260 (53%), Positives = 175/260 (67%), Gaps = 9/260 (3%) Query: 1 VARGIEDSCYQAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLIVATLAQTDG--ELLRK 58 +ARGIED C AGYSVILCNSDDDP KQRDYL VL+ KR DG+IV++ E L + Sbjct: 77 LARGIEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGIIVSSAGPDTALVEALGE 136 Query: 59 MKVPTVLLDRAPKDMAIDLVAVDNAAGGVLAAEHLLALGRRRIACIGGPESLDISAERIA 118 +P V++DR + + D V VD+ G +A +HLL LG RRIACI GP +L ++AER+A Sbjct: 137 SALPIVMVDRPTEGIQADQVQVDHEEGAYMATKHLLDLGHRRIACISGPSALSVTAERLA 196 Query: 119 GLRRKLQTAGVAIAPGLLAYADFTSAGGYAAARALLSVAQPPDAIFCCNDLMAIGALRAA 178 G R L+ AGV A +A DFTS GGY AAR LL+ + P AIF NDLM IGALRAA Sbjct: 197 GFHRALREAGVPEATARIAEGDFTSPGGYRAARQLLTEGEMPTAIFAGNDLMGIGALRAA 256 Query: 179 AERGIDVPDALSVIGFDDIDLASFVHPPLTSVSQNTRTLGQLTAQCLLERIADPT--RPV 236 AE GI VP ALSV+GFDDI+L+ +V+P L++V Q+ R LG+ TAQ LLE + D PV Sbjct: 257 AELGIPVPKALSVMGFDDIELSRYVYPALSTVGQSIRQLGETTAQTLLEHLGDNALRHPV 316 Query: 237 Q-----RKTITPQLHVRGST 251 + R + P+L +R ST Sbjct: 317 EEPRARRIVLPPRLSLREST 336