BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0027.p         (130 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VVZ4.1 F1VVZ4_9BURK Ribose ABC transport system, high affinity...   192   1e-47
D8IUD5.1 D8IUD5_HERSS D-ribose pyranase EC=5.5.1.n1                   184   4e-45
F2KJ32.1 F2KJ32_PSEBR D-ribose pyranase                               162   1e-38
Q4KEW9.1 RBSD_PSEF5 D-ribose pyranase EC=5.5.1.n1                     162   1e-38
Q3KEY9.1 RBSD_PSEPF D-ribose pyranase EC=5.5.1.n1                     162   1e-38

>F1VVZ4.1 F1VVZ4_9BURK Ribose ABC transport system, high affinity permease
           RbsD
          Length = 130

 Score =  192 bits (488), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 108/130 (83%)

Query: 1   MKKTPLLNIALSQLIASLGHGDSIVVGDAGLPVPPGVPLIDLALTRGIPGFMDTLQTVLA 60
           MKKTPLLNIALSQLIASLGHGD+IV+GDAGLPVPPGVPLIDLALTRGIPG +DTL+ +L 
Sbjct: 1   MKKTPLLNIALSQLIASLGHGDAIVIGDAGLPVPPGVPLIDLALTRGIPGLLDTLRAILT 60

Query: 61  EMHVEHHVLADELSERSPKLAQQVGLLGLAGKQTLPHEEFKRRTQQARAVIRTGEFTPYA 120
           EM VE HVLA EL+  SP +A  +  L L G+ T+ H +FK+ T+ ARA++RTGE TPYA
Sbjct: 61  EMQVEQHVLASELALHSPAMASAIAALDLPGRLTMSHADFKQTTRSARAIVRTGECTPYA 120

Query: 121 NIILIAGVTF 130
           NI+L+AGV F
Sbjct: 121 NIVLVAGVAF 130


>D8IUD5.1 D8IUD5_HERSS D-ribose pyranase EC=5.5.1.n1
          Length = 130

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 111/130 (85%)

Query: 1   MKKTPLLNIALSQLIASLGHGDSIVVGDAGLPVPPGVPLIDLALTRGIPGFMDTLQTVLA 60
           MKKT LLN A+SQ+IA++GHGD++V+GD GLPVPPGVP+IDLA+TRG+PGF+  L+TVL+
Sbjct: 1   MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPVIDLAVTRGVPGFLTVLETVLS 60

Query: 61  EMHVEHHVLADELSERSPKLAQQVGLLGLAGKQTLPHEEFKRRTQQARAVIRTGEFTPYA 120
           E+ VE HV+ADEL++ SP LA Q+  L LAGK+++ HE FK +T++ARAVIRTGE TPYA
Sbjct: 61  ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHESFKEQTRRARAVIRTGECTPYA 120

Query: 121 NIILIAGVTF 130
           NIIL +GV F
Sbjct: 121 NIILGSGVVF 130


>F2KJ32.1 F2KJ32_PSEBR D-ribose pyranase
          Length = 134

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 103/134 (76%), Gaps = 4/134 (2%)

Query: 1   MKKTPLLNIALSQLIASLGHGDSIVVGDAGLPVPPGVPLIDLALTRGIPGFMDTLQTVLA 60
           MKKTPLLN+ALS+LIASLGHGD +V+GDAGLPVPP V LIDLALT GIP F+ TL+ VL+
Sbjct: 1   MKKTPLLNVALSRLIASLGHGDKVVIGDAGLPVPPQVELIDLALTHGIPDFVSTLKVVLS 60

Query: 61  EMHVEHHVLADELSERSPKLAQQVGLL----GLAGKQTLPHEEFKRRTQQARAVIRTGEF 116
           EM V+ HVLA+E+ ++ P     +  L     L  ++ + HE+FK  ++QARA+IRTGE 
Sbjct: 61  EMQVQSHVLAEEILDKQPSALTTLEALHAEGALGERELVSHEQFKIISRQARAIIRTGEC 120

Query: 117 TPYANIILIAGVTF 130
           +PY NI+L+AGVTF
Sbjct: 121 SPYCNIVLVAGVTF 134


>Q4KEW9.1 RBSD_PSEF5 D-ribose pyranase EC=5.5.1.n1
          Length = 134

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 103/134 (76%), Gaps = 4/134 (2%)

Query: 1   MKKTPLLNIALSQLIASLGHGDSIVVGDAGLPVPPGVPLIDLALTRGIPGFMDTLQTVLA 60
           MKKTPLLNIALS+LIASLGHGD +V+GDAGLPVPPGV LIDLALT G+P F+ TL+ +L+
Sbjct: 1   MKKTPLLNIALSRLIASLGHGDIVVIGDAGLPVPPGVELIDLALTHGVPDFLTTLKVLLS 60

Query: 61  EMHVEHHVLADELSERSPK-LAQQVGLLG---LAGKQTLPHEEFKRRTQQARAVIRTGEF 116
           EM VE HVLA+E+  + P  LA   G+     L  +Q + HE+FK  ++QARAVIRTGE 
Sbjct: 61  EMQVERHVLAEEILLKQPTPLAALEGMTAGGELGQRQLMNHEDFKVLSRQARAVIRTGEC 120

Query: 117 TPYANIILIAGVTF 130
            PY NI LIAGVTF
Sbjct: 121 QPYCNIALIAGVTF 134


>Q3KEY9.1 RBSD_PSEPF D-ribose pyranase EC=5.5.1.n1
          Length = 134

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 100/134 (74%), Gaps = 4/134 (2%)

Query: 1   MKKTPLLNIALSQLIASLGHGDSIVVGDAGLPVPPGVPLIDLALTRGIPGFMDTLQTVLA 60
           MKKTPLLN+ALS+LIASLGHGD +V+GDAGLPVPPGV LIDLALT G+P F+ TL+ VL+
Sbjct: 1   MKKTPLLNVALSRLIASLGHGDVVVIGDAGLPVPPGVELIDLALTHGVPDFVSTLKVVLS 60

Query: 61  EMHVEHHVLADELSERSPKLAQQVGLLG----LAGKQTLPHEEFKRRTQQARAVIRTGEF 116
           EM VE H LA E+ ++ P     +  L     L  +  L HE+FK  ++QARA++RTGE 
Sbjct: 61  EMQVESHALAKEIFDKQPTALSTLDELNDEGSLGRRDLLSHEQFKVLSRQARAIVRTGEC 120

Query: 117 TPYANIILIAGVTF 130
            PY NI+L+AGVTF
Sbjct: 121 QPYCNIVLVAGVTF 134