BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0003.p (334 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4G3I0.1 A4G3I0_HERAR Protein RdoA 555 e-156 A6SW97.1 A6SW97_JANMA Uncharacterized conserved protein 550 e-155 D8IPD2.1 D8IPD2_HERSS Homoserine kinase type II protein EC=2.7.1.39 550 e-155 F1W1R6.1 F1W1R6_9BURK YihE protein, required for LPS synthesis 520 e-145 D5CLY0.1 D5CLY0_SIDLE Aminoglycoside phosphotransferase 511 e-143 >A4G3I0.1 A4G3I0_HERAR Protein RdoA Length = 330 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 265/327 (81%), Positives = 293/327 (89%) Query: 6 DSTTVFNFAGLSPDTVLDALDSVGLYGDGRLLALNSYENRVYQVGMEEGPPLVAKFYRPQ 65 + +T +FA L+PD VLDAL+SVGLY DGRLLALNSYENRVYQ+G+E+GPPLVAKFYRP Sbjct: 2 NESTPLSFATLTPDCVLDALESVGLYSDGRLLALNSYENRVYQIGIEDGPPLVAKFYRPA 61 Query: 66 RWSDEAILEEHAFVSELVEQEIPVVPAMLLPNGRSLQEFQGFRFAAFTRHGGRAPELDNP 125 RWSD AILEEHAFV++LVE+EIPVVPAM L NG++L EF GFRFA F RHGGRAPELD+P Sbjct: 62 RWSDAAILEEHAFVAKLVEREIPVVPAMTLANGKTLHEFSGFRFAVFARHGGRAPELDDP 121 Query: 126 DTLEWLGRFIGRIHAVGMQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKSTVD 185 TLEWLGRFIGRIHAVG + F HRPALNIATFGEEPRDYLLAN+FIP D+L +Y+S + Sbjct: 122 ATLEWLGRFIGRIHAVGALQTFEHRPALNIATFGEEPRDYLLANNFIPPDLLDAYRSVIA 181 Query: 186 LALDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSG 245 ALDGVRRCFDRAGD+ LRLHGDCH GNVLWTDAGPHFVDFDDSR GPAIQDLWMLLSG Sbjct: 182 QALDGVRRCFDRAGDVSILRLHGDCHCGNVLWTDAGPHFVDFDDSRMGPAIQDLWMLLSG 241 Query: 246 ERGEMVRQLSDLLAGYESFCEFEQRELYLIEALRTLRLIHYSAWLARRWEDPAFPQAFPW 305 ER +MVRQLSDLLAGYE F +F+ REL+LIEALRTLRLIHY+AWLARRW+DPAFP AFPW Sbjct: 242 ERRDMVRQLSDLLAGYEDFADFDVRELHLIEALRTLRLIHYAAWLARRWDDPAFPVAFPW 301 Query: 306 FNTQRYWQDRILELREQIALMDEPPLW 332 FNTQRYWQDRILELREQ+ALMDE PLW Sbjct: 302 FNTQRYWQDRILELREQVALMDEAPLW 328 >A6SW97.1 A6SW97_JANMA Uncharacterized conserved protein Length = 330 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/329 (80%), Positives = 290/329 (88%), Gaps = 1/329 (0%) Query: 4 MTDSTTVFNFAGLSPDTVLDALDSVGLYGDGRLLALNSYENRVYQVGMEEGPPLVAKFYR 63 M DST + +F+ L+PD VLDAL+SVGLY DGRLLALNSYENRVYQVGME+GPPLVAKFYR Sbjct: 1 MNDSTPL-SFSTLTPDCVLDALESVGLYSDGRLLALNSYENRVYQVGMEDGPPLVAKFYR 59 Query: 64 PQRWSDEAILEEHAFVSELVEQEIPVVPAMLLPNGRSLQEFQGFRFAAFTRHGGRAPELD 123 P RW+D AILEEHAFV ELVE EIPVVPA L NG++L EF GFRFA F RHGGRAPELD Sbjct: 60 PARWTDAAILEEHAFVHELVESEIPVVPATTLANGKTLHEFAGFRFAVFARHGGRAPELD 119 Query: 124 NPDTLEWLGRFIGRIHAVGMQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKST 183 +P TLEWLGRFIGRIHAVG + F HRPALNI TFGEEPRDYLLA++FIP D+L +Y+S Sbjct: 120 DPATLEWLGRFIGRIHAVGALKNFEHRPALNIQTFGEEPRDYLLAHNFIPPDLLEAYRSV 179 Query: 184 VDLALDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLL 243 V ALDGVRRC+DRAGD++ RLHGDCH GNVLWTDAGPHFVDFDDSRSGPAIQDLWMLL Sbjct: 180 VTQALDGVRRCYDRAGDVRSTRLHGDCHCGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLL 239 Query: 244 SGERGEMVRQLSDLLAGYESFCEFEQRELYLIEALRTLRLIHYSAWLARRWEDPAFPQAF 303 SGER +MVRQ +DLL GYE F EF+ REL+LIEALRTLRLIHY+AWLARRW+DPAFP AF Sbjct: 240 SGERRDMVRQFTDLLVGYEDFAEFDTRELHLIEALRTLRLIHYAAWLARRWDDPAFPVAF 299 Query: 304 PWFNTQRYWQDRILELREQIALMDEPPLW 332 PWFNTQRYWQDRILELREQ+ALMDE PLW Sbjct: 300 PWFNTQRYWQDRILELREQVALMDEAPLW 328 >D8IPD2.1 D8IPD2_HERSS Homoserine kinase type II protein EC=2.7.1.39 Length = 336 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/333 (79%), Positives = 295/333 (88%) Query: 2 AAMTDSTTVFNFAGLSPDTVLDALDSVGLYGDGRLLALNSYENRVYQVGMEEGPPLVAKF 61 +A D +FA LSPDTVLDAL + GLYGDGRLLALNSYENRVYQVGMEEGPPLVAKF Sbjct: 4 SAAPDQPDATSFATLSPDTVLDALAAQGLYGDGRLLALNSYENRVYQVGMEEGPPLVAKF 63 Query: 62 YRPQRWSDEAILEEHAFVSELVEQEIPVVPAMLLPNGRSLQEFQGFRFAAFTRHGGRAPE 121 YRP RW+DE ILEEHAF EL + E+PVVPAM L NGR+L GFRFA F RHGGRAPE Sbjct: 64 YRPLRWTDEQILEEHAFSQELADDEVPVVPAMRLENGRTLHRHAGFRFAVFRRHGGRAPE 123 Query: 122 LDNPDTLEWLGRFIGRIHAVGMQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYK 181 LD+ DTLE LGRFIGRIHAVG+++PF HRPAL+ A+FGEEPRD+LLA+DFIPMDV +++ Sbjct: 124 LDDADTLERLGRFIGRIHAVGLRQPFVHRPALDQASFGEEPRDWLLAHDFIPMDVATAWR 183 Query: 182 STVDLALDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWM 241 +TV+ AL GV+RC++RAG+I+ LRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPA+QDLWM Sbjct: 184 TTVEQALAGVQRCYERAGEIRTLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAVQDLWM 243 Query: 242 LLSGERGEMVRQLSDLLAGYESFCEFEQRELYLIEALRTLRLIHYSAWLARRWEDPAFPQ 301 LLSGER EMV QL+DLLAGYESFCEFE RELYLIEALRTLRLIHYSAWLARRW+DPAFP Sbjct: 244 LLSGERREMVGQLADLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDPAFPA 303 Query: 302 AFPWFNTQRYWQDRILELREQIALMDEPPLWPL 334 AFPWFNTQRYWQDRILELREQIALMDE PLWP+ Sbjct: 304 AFPWFNTQRYWQDRILELREQIALMDEAPLWPV 336 >F1W1R6.1 F1W1R6_9BURK YihE protein, required for LPS synthesis Length = 329 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 246/323 (76%), Positives = 283/323 (87%) Query: 9 TVFNFAGLSPDTVLDALDSVGLYGDGRLLALNSYENRVYQVGMEEGPPLVAKFYRPQRWS 68 ++ +FA LSPD VLDALDS+GL+GDGRLLALNSYENRVYQ+G+++GPP+VAKFYRP RWS Sbjct: 5 SIPSFADLSPDLVLDALDSIGLHGDGRLLALNSYENRVYQIGIDDGPPVVAKFYRPGRWS 64 Query: 69 DEAILEEHAFVSELVEQEIPVVPAMLLPNGRSLQEFQGFRFAAFTRHGGRAPELDNPDTL 128 D AI EEHAFV ELV QEIPVV A L +G SL GFRFA F RHGGRAPELD+PDTL Sbjct: 65 DAAIREEHAFVEELVAQEIPVVSATRLGDGNSLHTLDGFRFAVFARHGGRAPELDDPDTL 124 Query: 129 EWLGRFIGRIHAVGMQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKSTVDLAL 188 EW+GRFIGRIHAVG +PF RP L+I +FG EPR +LLA+DFIP ++LA+++S +AL Sbjct: 125 EWMGRFIGRIHAVGKLKPFIERPTLDIHSFGTEPRAWLLAHDFIPPELLAAWQSVTTMAL 184 Query: 189 DGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSGERG 248 DGVRRC+DRAGD+ LRLHGD H GNVLWTDAGPHFVDFDDSR+GPAIQDLWM+LSGER Sbjct: 185 DGVRRCYDRAGDVASLRLHGDVHSGNVLWTDAGPHFVDFDDSRNGPAIQDLWMMLSGERA 244 Query: 249 EMVRQLSDLLAGYESFCEFEQRELYLIEALRTLRLIHYSAWLARRWEDPAFPQAFPWFNT 308 +MVRQ+SDLLAGY+ FC+F+ REL+LIEALRTLRL+HYSAWLARRW+DPAFP AFPWFNT Sbjct: 245 DMVRQMSDLLAGYDDFCDFDPRELHLIEALRTLRLLHYSAWLARRWDDPAFPVAFPWFNT 304 Query: 309 QRYWQDRILELREQIALMDEPPL 331 QRYWQDRILELREQ+ALMDE PL Sbjct: 305 QRYWQDRILELREQVALMDEAPL 327 >D5CLY0.1 D5CLY0_SIDLE Aminoglycoside phosphotransferase Length = 329 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/327 (74%), Positives = 280/327 (85%), Gaps = 1/327 (0%) Query: 6 DSTTVFNFAGLSPDTVLDALDSVGLYGDGRLLALNSYENRVYQVGMEEGPPLVAKFYRPQ 65 ++ T +F+ L+PD VL+AL+SVGL DGRLLALNSYENRVYQ G+E+G PLVAKFYRP Sbjct: 2 NARTDHSFSMLTPDCVLNALESVGLRCDGRLLALNSYENRVYQAGIEDGAPLVAKFYRPA 61 Query: 66 RWSDEAILEEHAFVSELVEQEIPVVPAMLLPNGRSLQEFQGFRFAAFTRHGGRAPELDNP 125 RW+DEAILEEHAFV EL E+EIPVVPA ++ +G++L F GFRF+ F +HGGRAPEL++ Sbjct: 62 RWTDEAILEEHAFVQELAEREIPVVPASVI-DGKTLHLFDGFRFSVFPKHGGRAPELEDR 120 Query: 126 DTLEWLGRFIGRIHAVGMQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKSTVD 185 DTLEWLGRF+GRIHAVG R + HRP LNI TFG EPRD+LLAN FIP D+ A+Y+S Sbjct: 121 DTLEWLGRFLGRIHAVGAVRDYQHRPDLNIETFGIEPRDFLLANGFIPADIDAAYRSVAQ 180 Query: 186 LALDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSG 245 ALDGVR CFDRAGD+K LRLHGDCH GNVLWTD GPHFVDFDDSR GPA+QDLWMLLSG Sbjct: 181 QALDGVRHCFDRAGDVKHLRLHGDCHAGNVLWTDDGPHFVDFDDSRMGPAVQDLWMLLSG 240 Query: 246 ERGEMVRQLSDLLAGYESFCEFEQRELYLIEALRTLRLIHYSAWLARRWEDPAFPQAFPW 305 ER + +RQ+ D+LAGYE FCEF+ REL+LIEALRTLRLIHYSAWLA+RW+D AF AFPW Sbjct: 241 EREDRIRQMGDVLAGYEDFCEFDARELHLIEALRTLRLIHYSAWLAKRWDDAAFKHAFPW 300 Query: 306 FNTQRYWQDRILELREQIALMDEPPLW 332 FNTQRYWQDRILELREQIALM+EPPLW Sbjct: 301 FNTQRYWQDRILELREQIALMEEPPLW 327