BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0027.p (548 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6T229.1 A6T229_JANMA RecN DNA repair protein 922 0.0 D8IYH1.1 D8IYH1_HERSS DNA repair protein 907 0.0 A4G8D6.1 A4G8D6_HERAR DNA repair protein RecN (Recombination pro... 894 0.0 F1VUS6.1 F1VUS6_9BURK DNA repair protein RecN 856 0.0 A0SZ16.1 A0SZ16_9BURK Putative DNA repair protein RecN (Fragment) 732 0.0 >A6T229.1 A6T229_JANMA RecN DNA repair protein Length = 548 Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/547 (83%), Positives = 500/547 (91%) Query: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA Sbjct: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 Query: 61 KADITADFSAGPYVAAWLEAHEFFDEDGGVLLRRVIDNAGRSKAFINGIAATATQLRELG 120 KADITA+FSA + AWL +EF +EDGG LLRRVIDN GRSKAFINGI ATATQLRELG Sbjct: 61 KADITAEFSASAELDAWLAENEFSNEDGGALLRRVIDNTGRSKAFINGIVATATQLRELG 120 Query: 121 ELLVDIHGQHAHQSLLKSDAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 E LVDIHGQHAHQSLLK+DAQR LLD+QAGL +E KAVAAAYKTWRALA+QREEFE NAK Sbjct: 121 EKLVDIHGQHAHQSLLKTDAQRVLLDNQAGLQDEVKAVAAAYKTWRALARQREEFETNAK 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDSPI 240 NVLLERERLEWQV ELEKLAVKPGEW+DISNEHSRLSHAASLI+GAQEAL+ ISE+D+P+ Sbjct: 181 NVLLERERLEWQVGELEKLAVKPGEWTDISNEHSRLSHAASLIEGAQEALNLISEADTPM 240 Query: 241 LSQLSSLTQKLGKLTDVDAALKPVMEALEPAQIQLQEAVYALNDYLGRVELDPARLKLVE 300 LSQLSSL ++GKL D+DA L+PV++ALEPA+IQLQEAVYALNDYL RVELDPARL+ VE Sbjct: 241 LSQLSSLNTRIGKLVDLDAGLQPVLDALEPARIQLQEAVYALNDYLSRVELDPARLREVE 300 Query: 301 GRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAQEAKLQAAYTGAAQK 360 RLE IHS +RKFRVA DDLPQE L+ +LKQLADASDLDALRAQE KL+AAYT AAQK Sbjct: 301 VRLENIHSASRKFRVAADDLPQELETLSAQLKQLADASDLDALRAQEEKLKAAYTSAAQK 360 Query: 361 LSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGVEQVEFLVAGHAGVAPR 420 L+K R KAAKALG+AVTAAMQ+LSM+GG+FAIAL+ CEPA+YG+EQ+EF+VA HAG PR Sbjct: 361 LTKARSKAAKALGDAVTAAMQELSMTGGKFAIALQPCEPASYGLEQIEFMVAAHAGTTPR 420 Query: 421 PLAKVASGGELARIALAISVIASSSTATPTLIFDEVDSGIGGGVAEVVGRLLKRLGQDRQ 480 PLAKVASGGELARIALAISVI SS+TATPTLIFDEVDSGIGGGVAEVVGRLL+RLGQDRQ Sbjct: 421 PLAKVASGGELARIALAISVITSSATATPTLIFDEVDSGIGGGVAEVVGRLLRRLGQDRQ 480 Query: 481 VLCVTHLPQVASQGNQHFQVSKRNEAGKTVSQIEALDVKSRVEEIARMLGGLEITATTRK 540 VLCVTHLPQVASQ NQHFQVSK++ GKTVS I+ALD +RVEEIARMLGGLEITATTR Sbjct: 481 VLCVTHLPQVASQANQHFQVSKQSSNGKTVSSIDALDSNARVEEIARMLGGLEITATTRS 540 Query: 541 HARELLA 547 HARELLA Sbjct: 541 HARELLA 547 >D8IYH1.1 D8IYH1_HERSS DNA repair protein Length = 548 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/547 (84%), Positives = 501/547 (91%) Query: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 MLRTL+IRDFVIVDAIELEFA GFSVFTGETGAGKSILIDALALALGGRGD SVVREGAA Sbjct: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAA 60 Query: 61 KADITADFSAGPYVAAWLEAHEFFDEDGGVLLRRVIDNAGRSKAFINGIAATATQLRELG 120 KAD++ADFSA P V AWLE HEF DE GGVLLRRVIDNAGRSKA+ING AATA QLRE+G Sbjct: 61 KADVSADFSATPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVG 120 Query: 121 ELLVDIHGQHAHQSLLKSDAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 E+LVDIHGQHAHQSL+K+DAQRQLLDSQAGLLE+A+ VAA+YKTWRALA+QRE+FE +A+ Sbjct: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDSPI 240 NVLLERERLEWQV+EL KLAVKPGEW++IS EHSRLSHAA+LI GAQEAL ISES+SPI Sbjct: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISESESPI 240 Query: 241 LSQLSSLTQKLGKLTDVDAALKPVMEALEPAQIQLQEAVYALNDYLGRVELDPARLKLVE 300 LSQLSS+TQKL KL DVD ALKPV++ALEPAQIQLQEAVYALNDYLGRVELDPARL+ VE Sbjct: 241 LSQLSSITQKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE 300 Query: 301 GRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAQEAKLQAAYTGAAQK 360 RLEAIHSTARKF V PD+LP+E+ KL+E+LKQLADASDLDALRAQE KL+ AY AQK Sbjct: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQK 360 Query: 361 LSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGVEQVEFLVAGHAGVAPR 420 LSK R KAA ALGEAVTAAMQDLSM+GGRF IAL EPAAYG+EQVEFLVAGHAGVAPR Sbjct: 361 LSKARAKAAAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR 420 Query: 421 PLAKVASGGELARIALAISVIASSSTATPTLIFDEVDSGIGGGVAEVVGRLLKRLGQDRQ 480 LAKVASGGELARI+LAISVIAS++T+ PTLIFDEVDSGIGG VAEVVGRLLKRLGQDRQ Sbjct: 421 ALAKVASGGELARISLAISVIASAATSIPTLIFDEVDSGIGGAVAEVVGRLLKRLGQDRQ 480 Query: 481 VLCVTHLPQVASQGNQHFQVSKRNEAGKTVSQIEALDVKSRVEEIARMLGGLEITATTRK 540 VLCVTHLPQVASQ NQH+QV KR+E GKT+S I+ LD K+RVEEIARMLGGLEITATTRK Sbjct: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK 540 Query: 541 HARELLA 547 HARELLA Sbjct: 541 HARELLA 547 >A4G8D6.1 A4G8D6_HERAR DNA repair protein RecN (Recombination protein N) Length = 549 Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/548 (81%), Positives = 491/548 (89%), Gaps = 1/548 (0%) Query: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 MLRTLSIRDFVIVDAIELEF+ GFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA Sbjct: 1 MLRTLSIRDFVIVDAIELEFSSGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 Query: 61 KADITADFSAGPYVAAWLEAHEFFDEDGGVLLRRVIDNAGRSKAFINGIAATATQLRELG 120 KADITA+FSA + AWL +EF +E+GG LLRRVIDNAGRSKAFINGIAATATQLRELG Sbjct: 61 KADITAEFSASAELDAWLAENEFTNEEGGALLRRVIDNAGRSKAFINGIAATATQLRELG 120 Query: 121 ELLVDIHGQHAHQSLLKSDAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 E LVDIHGQHAHQSLLK D QR LLD+QAGL EE KAVA AYKTWRALA+QREEFE NAK Sbjct: 121 EKLVDIHGQHAHQSLLKQDMQRVLLDNQAGLQEEVKAVAGAYKTWRALARQREEFETNAK 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDS-P 239 NVLLERERLEWQV ELEKL+VKPGEW+DI+NEHSRLSHAASLI GAQ+AL+ IS++++ P Sbjct: 181 NVLLERERLEWQVGELEKLSVKPGEWADITNEHSRLSHAASLIKGAQDALTLISDAETAP 240 Query: 240 ILSQLSSLTQKLGKLTDVDAALKPVMEALEPAQIQLQEAVYALNDYLGRVELDPARLKLV 299 +LSQLSSL ++GKL D+DA L+PV++ALEPA+IQLQEAVYALNDYL RVELDPARL+ V Sbjct: 241 MLSQLSSLNIRIGKLIDLDAGLQPVLDALEPARIQLQEAVYALNDYLSRVELDPARLREV 300 Query: 300 EGRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAQEAKLQAAYTGAAQ 359 E RLE IHS +RKF VA DDLPQE L+ +LKQLADASDLDALR QE KLQAAY AAQ Sbjct: 301 ETRLENIHSASRKFHVAADDLPQELETLSAQLKQLADASDLDALRVQEEKLQAAYMAAAQ 360 Query: 360 KLSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGVEQVEFLVAGHAGVAP 419 KLSK R KAA+ALG+AVT AMQ+LSM+GG+FAIAL+ CEPA+YGVEQ+EF+VA HAG P Sbjct: 361 KLSKARSKAARALGDAVTTAMQELSMTGGKFAIALQPCEPASYGVEQIEFMVAAHAGTTP 420 Query: 420 RPLAKVASGGELARIALAISVIASSSTATPTLIFDEVDSGIGGGVAEVVGRLLKRLGQDR 479 RPLAKVASGGELARIALAISVI SS+TATPTLIFDEVDSGIGGGVAEVVGRLL+RLGQDR Sbjct: 421 RPLAKVASGGELARIALAISVITSSATATPTLIFDEVDSGIGGGVAEVVGRLLRRLGQDR 480 Query: 480 QVLCVTHLPQVASQGNQHFQVSKRNEAGKTVSQIEALDVKSRVEEIARMLGGLEITATTR 539 QVLCVTHLPQVASQ NQHFQVSK++ GKT S I ALD +RVEEIARMLGGLEITATTR Sbjct: 481 QVLCVTHLPQVASQANQHFQVSKQSSNGKTASSIAALDDHARVEEIARMLGGLEITATTR 540 Query: 540 KHARELLA 547 HARELLA Sbjct: 541 THARELLA 548 >F1VUS6.1 F1VUS6_9BURK DNA repair protein RecN Length = 551 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/550 (78%), Positives = 483/550 (87%), Gaps = 3/550 (0%) Query: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 MLRTL+IRDFVIVD IEL+F+ GFSV TGETGAGKSILIDALALALGGRGDASVVR+GAA Sbjct: 1 MLRTLTIRDFVIVDLIELDFSAGFSVLTGETGAGKSILIDALALALGGRGDASVVRDGAA 60 Query: 61 KADITADFSAGPYVAAWLEAHEFFDEDGGVLLRRVIDNAGRSKAFINGIAATATQLRELG 120 KADI+AD+S AWL AH+F DGGVLLRRVIDNAGRSKA+INGIAATATQLR+LG Sbjct: 61 KADISADYSTHAEADAWLAAHDFASPDGGVLLRRVIDNAGRSKAYINGIAATATQLRDLG 120 Query: 121 ELLVDIHGQHAHQSLLKSDAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 ELLVDIHGQHAHQSLLK+DAQRQLLD+QA L E+ +AV AYK+WRA+ KQREEFE NAK Sbjct: 121 ELLVDIHGQHAHQSLLKTDAQRQLLDTQASLQEQVRAVGTAYKSWRAVGKQREEFETNAK 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDS-- 238 NVLLERERLEWQV EL+KLA + GEW++IS+EHSRLSHAASLIDGAQ+AL+AISES+S Sbjct: 181 NVLLERERLEWQVGELDKLAPQDGEWTEISSEHSRLSHAASLIDGAQDALTAISESESGT 240 Query: 239 -PILSQLSSLTQKLGKLTDVDAALKPVMEALEPAQIQLQEAVYALNDYLGRVELDPARLK 297 P+LSQL++L +LGKL D+D LKPV++ LEPA+IQLQEAVYALNDYLGR+ELDP RL+ Sbjct: 241 VPMLSQLTALNLRLGKLADIDDGLKPVLDLLEPARIQLQEAVYALNDYLGRLELDPRRLQ 300 Query: 298 LVEGRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAQEAKLQAAYTGA 357 VE RL +HSTARKF + P++LPQE A L+ +L+QLADASDLDALRAQE KL+ Y Sbjct: 301 QVEQRLGDLHSTARKFHITPEELPQEFAALSAQLRQLADASDLDALRAQEEKLKDHYLAL 360 Query: 358 AQKLSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGVEQVEFLVAGHAGV 417 A+KLS R+KAA+ LGEAVT AMQ+LSM+GGRF +AL C PA GVEQ+EFLVAGHAG Sbjct: 361 AKKLSAARMKAARVLGEAVTKAMQELSMAGGRFEVALVPCAPAVSGVEQIEFLVAGHAGS 420 Query: 418 APRPLAKVASGGELARIALAISVIASSSTATPTLIFDEVDSGIGGGVAEVVGRLLKRLGQ 477 PRPLAKVASGGELARIALAISVIAS++T TPTLIFDEVDSGIGGGVAEVVGRLLK+LGQ Sbjct: 421 VPRPLAKVASGGELARIALAISVIASTATTTPTLIFDEVDSGIGGGVAEVVGRLLKKLGQ 480 Query: 478 DRQVLCVTHLPQVASQGNQHFQVSKRNEAGKTVSQIEALDVKSRVEEIARMLGGLEITAT 537 +RQVLCVTHLPQVASQ NQH QVSK N AGKTVS+I ALD KSRVEEIARMLGG+EITAT Sbjct: 481 ERQVLCVTHLPQVASQANQHLQVSKFNAAGKTVSRIAALDSKSRVEEIARMLGGIEITAT 540 Query: 538 TRKHARELLA 547 TRKHARELLA Sbjct: 541 TRKHARELLA 550 >A0SZ16.1 A0SZ16_9BURK Putative DNA repair protein RecN (Fragment) Length = 493 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/493 (74%), Positives = 419/493 (84%), Gaps = 6/493 (1%) Query: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 ML TLSIRDFVIVD IELEF+ GFSV TGETGAGKSILIDAL LALGGRGDASVVREGAA Sbjct: 1 MLHTLSIRDFVIVDTIELEFSAGFSVLTGETGAGKSILIDALTLALGGRGDASVVREGAA 60 Query: 61 KADITADFSAGPYVAAWLEAHEFFDEDGGVLLRRVIDNAGRSKAFINGIAATATQLRELG 120 KADITADFS AWL AHEF ++DGG LLRRVIDNAGRSKA+INGI ATA QLRELG Sbjct: 61 KADITADFSVSEVAQAWLVAHEFANDDGGALLRRVIDNAGRSKAYINGIPATAAQLRELG 120 Query: 121 ELLVDIHGQHAHQSLLKSDAQRQLLDSQA-----GLLEEAKAVAAAYKTWRALAKQREEF 175 ++LVDIHGQHAHQSLLKS+AQR LLD QA G ++A+ VAA +K WRAL +QREEF Sbjct: 121 DMLVDIHGQHAHQSLLKSEAQRALLDGQATAREAGAEQDARQVAALHKRWRALVRQREEF 180 Query: 176 EVNAKNVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISE 235 E NA NVL ERERLEWQV ELEKLA KPGEW++I+NEHSRLSHAASL++GAQEALS ISE Sbjct: 181 ETNAANVLYERERLEWQVGELEKLAAKPGEWTEITNEHSRLSHAASLLEGAQEALSLISE 240 Query: 236 S-DSPILSQLSSLTQKLGKLTDVDAALKPVMEALEPAQIQLQEAVYALNDYLGRVELDPA 294 S D PI+SQLS+L QKLGKL VDA L+P+++ +E ++IQLQE+VYALN+YL RVELDP Sbjct: 241 SEDHPIVSQLSALNQKLGKLVSVDAELQPIVDLIESSRIQLQESVYALNNYLDRVELDPE 300 Query: 295 RLKLVEGRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAQEAKLQAAY 354 RL ++ R+EA+HSTARKFRV P++LP+EHAKL+E+L+ LADASD++ L QEAK++A Y Sbjct: 301 RLHQLDARMEAMHSTARKFRVTPEELPEEHAKLSEKLQHLADASDIEGLLRQEAKIEAEY 360 Query: 355 TGAAQKLSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGVEQVEFLVAGH 414 G A++LS R AA LG+AVT AMQ+LSM+GG F IAL CEPAA+G+EQVEFLVAGH Sbjct: 361 RGVAERLSDTRRAAALELGQAVTRAMQELSMTGGSFEIALHPCEPAAHGLEQVEFLVAGH 420 Query: 415 AGVAPRPLAKVASGGELARIALAISVIASSSTATPTLIFDEVDSGIGGGVAEVVGRLLKR 474 AG APR LAKVASGGELARIALAISVI S +T TPTLIFDEVDSGIGG VAEVVGRLLKR Sbjct: 421 AGTAPRSLAKVASGGELARIALAISVITSHATTTPTLIFDEVDSGIGGAVAEVVGRLLKR 480 Query: 475 LGQDRQVLCVTHL 487 LGQ RQVLCVTHL Sbjct: 481 LGQGRQVLCVTHL 493