BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0021.p         (170 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYG6.1 D8IYG6_HERSS Small protein A (TmRNA-binding) protein         199   9e-50
A6T234.1 A6T234_JANMA Uncharacterized conserved protein               167   6e-40
A4G8E1.1 A4G8E1_HERAR Putative uncharacterized protein                165   2e-39
F1VUS1.1 F1VUS1_9BURK SmpA/OmlA domain protein                        153   7e-36
C3XCM1.1 C3XCM1_OXAFO SmpA/OmlA family protein                        147   4e-34

>D8IYG6.1 D8IYG6_HERSS Small protein A (TmRNA-binding) protein
          Length = 181

 Score =  199 bits (507), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 38  GVQVSKKS-SLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHS 96
           GV+VS KS SLFGFL+PYRIDIQQGNFVS+EMVAQL+PG+TRDQVRFVLGTPLL D+FH+
Sbjct: 44  GVKVSGKSNSLFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHT 103

Query: 97  DRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGAMPEL 156
           +RWDY+FRLAKGNGE+M+SRV+VFFKD+L++  +GG DLPTE EYL+LI  +K G+  +L
Sbjct: 104 NRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKL 163

Query: 157 SDTPTNTAPP 166
           +D     A P
Sbjct: 164 TDDDVKPASP 173


>A6T234.1 A6T234_JANMA Uncharacterized conserved protein
          Length = 253

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 37  TGVQVSKKSSLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHS 96
           +GVQV ++    G   PYR DIQQGNFVS+EMVAQLK GMT+DQV F+LGTPLL DVFH 
Sbjct: 136 SGVQVKREKRFLGIFSPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLTDVFHG 195

Query: 97  DRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGA 152
           DRWDY FR+ KGNGE+ SSRV+V FKD L+  +EGG DLPTE++YL+ IA   K A
Sbjct: 196 DRWDYAFRMQKGNGEITSSRVTVHFKDKLVSSFEGGGDLPTEKDYLARIADKAKAA 251


>A4G8E1.1 A4G8E1_HERAR Putative uncharacterized protein
          Length = 216

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 36  ATGVQVSKKSSLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFH 95
           ATGVQ  + +   G  +PYR DIQQGNFVS+EMVAQLK GMT+DQV F+LGTPLL D+FH
Sbjct: 99  ATGVQTKQANRFLGIFRPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLNDLFH 158

Query: 96  SDRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGA 152
           +DRWDY FRL KGNGE+ +SRV+VFFKD L+  +EGG DLPTE++YL  I+   K A
Sbjct: 159 ADRWDYAFRLQKGNGEITTSRVTVFFKDKLVSHFEGG-DLPTEKDYLDRISDKAKEA 214


>F1VUS1.1 F1VUS1_9BURK SmpA/OmlA domain protein
          Length = 182

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 110/178 (61%), Gaps = 28/178 (15%)

Query: 18  LLSGCASKKPAEGAPAPDA----------------------TGVQVSKKSS---LFGFLK 52
           LL+GCASK P   APA  A                       G+Q S  +S     G L 
Sbjct: 5   LLAGCASKNPLMEAPASMAAGPASAASSASAAEIASAARANAGMQRSTPTSARRFLGVLS 64

Query: 53  PYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHSDRWDYEFRLAKGNGEL 112
           PYRIDI QGNF+S+EMV QLK GMT DQVRF LGTPL+ D+FH+DRWDY FR+ K N E+
Sbjct: 65  PYRIDIPQGNFISEEMVQQLKEGMTPDQVRFALGTPLIIDIFHADRWDYVFRMLKRNDEV 124

Query: 113 MSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGAMPELSDTPTNTAPPSSSK 170
           +SSRV+V+FKD  + R+EGG +LPTE +YL ++AG     +  L+  PT    PSS++
Sbjct: 125 LSSRVTVYFKDGRVSRFEGG-NLPTEVDYLEMLAGGVPQKVKPLA--PTVPVAPSSAR 179


>C3XCM1.1 C3XCM1_OXAFO SmpA/OmlA family protein
          Length = 416

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 82/99 (82%), Gaps = 1/99 (1%)

Query: 51  LKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHSDRWDYEFRLAKGNG 110
           L PY++DIQQGNFVS EM+++LKPGMT++QVRFVLGTPLL D+FH++RWDY FRL K NG
Sbjct: 102 LTPYKVDIQQGNFVSSEMLSKLKPGMTKEQVRFVLGTPLLTDMFHANRWDYLFRLQKPNG 161

Query: 111 ELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSK 149
            L ++RV+VFFKDNL++R     +LP E +YLS IAG K
Sbjct: 162 ALTTNRVTVFFKDNLVDRI-VHDNLPDEAQYLSNIAGDK 199