BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0012.p         (89 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYF9.1 D8IYF9_HERSS ABC-type spermidine/putrescine transport s...   147   4e-34
D5V0P1.1 D5V0P1_ARCNC Binding-protein-dependent transport system...   111   3e-23
A6D2K5.1 A6D2K5_9VIBR Binding-protein-dependent transport system...   111   5e-23
Q1LDS2.1 Q1LDS2_RALME Putative ABC transporter, inner membrane c...   110   6e-23
D8MVL9.1 D8MVL9_ERWBE ABC-type transporter, permease component        108   3e-22

>D8IYF9.1 D8IYF9_HERSS ABC-type spermidine/putrescine transport system,
          permease component II protein
          Length = 267

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 79/88 (89%)

Query: 1  MKHSLRFYLQLTFTLLVCAFLIVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMT 60
          M++  RFYLQL FTLLVCAFL+VPVVLS+LAGVT+NFFVGLSSG TLRWVAQVW+ YQ T
Sbjct: 1  MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60

Query: 61 IWRSIAIALACLAVTLVVGVPLAYMLAR 88
          IWRS+ IALACLAVTL  GVPLAYMLAR
Sbjct: 61 IWRSLFIALACLAVTLAAGVPLAYMLAR 88


>D5V0P1.1 D5V0P1_ARCNC Binding-protein-dependent transport systems inner
          membrane component
          Length = 274

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 72/89 (80%)

Query: 1  MKHSLRFYLQLTFTLLVCAFLIVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMT 60
          MK  + FY QL FTLLVCAFLIVPV++S+ AG+T+N+F+G+ SG T +W+ +V+D Y  T
Sbjct: 1  MKRPILFYSQLFFTLLVCAFLIVPVLMSITAGLTENYFIGIKSGLTFKWIFEVFDLYLDT 60

Query: 61 IWRSIAIALACLAVTLVVGVPLAYMLARR 89
          I+RSI IAL+ L VTL++G+P AY+LA++
Sbjct: 61 IYRSIYIALSTLIVTLILGIPTAYVLAKK 89


>A6D2K5.1 A6D2K5_9VIBR Binding-protein-dependent transport systems inner
          membrane component
          Length = 262

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 68/88 (77%)

Query: 1  MKHSLRFYLQLTFTLLVCAFLIVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMT 60
          MK    FY+QL FTLLVCAFLIVPV +S++AG+T+N+FVG+ SG TLRWV QVW  Y  T
Sbjct: 1  MKKDKYFYIQLGFTLLVCAFLIVPVFMSIVAGLTNNYFVGVKSGLTLRWVEQVWSLYSDT 60

Query: 61 IWRSIAIALACLAVTLVVGVPLAYMLAR 88
          IW ++ IA+A   + ++VGVP AY+LA+
Sbjct: 61 IWLTLQIAIATTIINVLVGVPCAYVLAK 88


>Q1LDS2.1 Q1LDS2_RALME Putative ABC transporter, inner membrane component
          Length = 291

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 7  FYLQLTFTLLVCAFLIVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMTIWRSIA 66
          ++LQLT TL VCAF+ VPVVLSVLAG+T+N FVGLSSG T RW+ +VW  Y+ TI+ S+ 
Sbjct: 10 YWLQLTLTLAVCAFMTVPVVLSVLAGLTNNIFVGLSSGLTTRWLVEVWSLYRNTIFLSLG 69

Query: 67 IALACLAVTLVVGVPLAYMLARR 89
          IALACLA TLV+GVP AY +A R
Sbjct: 70 IALACLACTLVIGVPAAYYMALR 92


>D8MVL9.1 D8MVL9_ERWBE ABC-type transporter, permease component
          Length = 273

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 69/88 (78%)

Query: 1  MKHSLRFYLQLTFTLLVCAFLIVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMT 60
          MK +  F+LQL FTL +C F++VP+VLS+LAGVT+N+F+GL SG TLRWVAQVW+ Y  T
Sbjct: 1  MKRTGLFWLQLIFTLSLCLFMVVPIVLSLLAGVTENYFIGLKSGLTLRWVAQVWELYAGT 60

Query: 61 IWRSIAIALACLAVTLVVGVPLAYMLAR 88
          IW S+ IA++CL   LV+GVP A+ L +
Sbjct: 61 IWLSLLIAVSCLGCVLVLGVPAAWGLLK 88