BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0072.p (382 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT90.1 D8IT90_HERSS Alanine racemase 1 EC=5.1.1.1 554 e-155 A6SY68.1 ALR_JANMA Alanine racemase EC=5.1.1.1 484 e-135 C3X2T0.1 C3X2T0_OXAFO Alanine racemase EC=5.1.1.1 465 e-129 C3X9R2.1 C3X9R2_OXAFO Alanine racemase EC=5.1.1.1 464 e-128 F1VVX4.1 F1VVX4_9BURK Alanine racemase, catabolic 450 e-124 >D8IT90.1 D8IT90_HERSS Alanine racemase 1 EC=5.1.1.1 Length = 359 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 272/360 (75%), Positives = 306/360 (85%), Gaps = 3/360 (0%) Query: 21 MPRPLVATIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE 80 MPRP+VA+I ISALQHNLAVAR+ AP A+VW V+KA YGHGL RA+R FA ADGLALIE Sbjct: 1 MPRPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGFAAADGLALIE 60 Query: 81 VNYAVQLRELGWSKPILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140 +YAV+LRELGW+KPILLLEGFFDADD+PVLA+H +QFAVHC+EQI LEA AA Sbjct: 61 PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAF---TAAAS 117 Query: 141 FDVHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANPDLPLAEQV 200 HLKMNSGMNRLGFKPE YRAAY RLQK+ V SIT++THFANADD NP LPLAEQV Sbjct: 118 LHAHLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQV 177 Query: 201 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGLRAAMTL 260 RRF A + GL G S NSAADLMHA+LA +WVR GVMLYGGTPGGG+A +FGLRAAMTL Sbjct: 178 RRFQAGSEGLDGPRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTL 237 Query: 261 ESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVIVDGVRTGT 320 ES+IIG+Q + G+A+GYGSRFVADK MKIG+VACGYADGYPRHAPN T V+VDGV+TGT Sbjct: 238 ESRIIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPNGTPVLVDGVKTGT 297 Query: 321 IGRVSMDMLTVDLSHIPGAGVGSRVVLWGEELPIDEVASAAGTIGYELMCALAPRVSVLE 380 +GRVSMDMLTVDL+HIP A VGS+V LWG +LPIDEVA AAGTIGYELMCALAPRV+V E Sbjct: 298 VGRVSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMCALAPRVAVRE 357 >A6SY68.1 ALR_JANMA Alanine racemase EC=5.1.1.1 Length = 359 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/362 (65%), Positives = 282/362 (77%), Gaps = 3/362 (0%) Query: 21 MPRPLVATIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE 80 MPRPL+ATIDI+AL+ NLA+A++RAP +K WAVVKA AYGHGL R +R FA ADGL LIE Sbjct: 1 MPRPLIATIDIAALRSNLALAKARAPHSKAWAVVKANAYGHGLERGMRGFAAADGLGLIE 60 Query: 81 VNYAVQLRELGWSKPILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140 ++ A +LRELGW+K ILLLEGFFDA D +LA H L +HC+EQ+ +LE A L Q Sbjct: 61 LDAAARLRELGWNKRILLLEGFFDASDTKLLAEHRLDTVIHCEEQLLMLEQAKLRTQ--- 117 Query: 141 FDVHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANPDLPLAEQV 200 DVHLK+NSGMNRLGF P YRAAYERL+ + VR I+ +THFANA+DP NP LP+ EQV Sbjct: 118 IDVHLKLNSGMNRLGFTPARYRAAYERLRAIPAVRHISFVTHFANAEDPDNPVLPVQEQV 177 Query: 201 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGLRAAMTL 260 RRF AT L G S ANSA DL+H A +W+R G+MLYG TPG +A++FGLRAAM+L Sbjct: 178 RRFKEATRDLPGEKSLANSATDLLHPAAAADWIRPGIMLYGATPGAQSAEQFGLRAAMSL 237 Query: 261 ESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVIVDGVRTGT 320 S+IIGVQ IV GDAVGYGS FVA M IG+VACGYADGYPRHAP+ T VIVDGV+T Sbjct: 238 HSEIIGVQHIVAGDAVGYGSAFVATAPMTIGVVACGYADGYPRHAPSGTPVIVDGVKTRM 297 Query: 321 IGRVSMDMLTVDLSHIPGAGVGSRVVLWGEELPIDEVASAAGTIGYELMCALAPRVSVLE 380 +GRVSMDM+TVDL+ + +GS+V LWG LPIDEVA+AAGT+GYELMC LAPRV ++E Sbjct: 298 VGRVSMDMITVDLTPVAKPRIGSKVTLWGASLPIDEVANAAGTVGYELMCGLAPRVQIVE 357 Query: 381 KN 382 N Sbjct: 358 VN 359 >C3X2T0.1 C3X2T0_OXAFO Alanine racemase EC=5.1.1.1 Length = 359 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/360 (61%), Positives = 277/360 (76%), Gaps = 3/360 (0%) Query: 21 MPRPLVATIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE 80 M RPLVA+IDI+A+QHNL++ RS P AK+WAVVKA AYGHGL R+VRAF+DADG ALIE Sbjct: 1 MTRPLVASIDIAAMQHNLSLVRSTVPRAKIWAVVKANAYGHGLERSVRAFSDADGFALIE 60 Query: 81 VNYAVQLRELGWSKPILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140 + A+ LRE+GW KPILLLEGFF ++P LAR+ + FAVHCDEQI +LE + LD Sbjct: 61 IEAAIHLREIGWKKPILLLEGFFYPHELPTLARYNIAFAVHCDEQIDMLEKSRLDMPV-- 118 Query: 141 FDVHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANPDLPLAEQV 200 DVHLKMN+GMNRLGF P Y A ERL+K+ VR I+ +THFAN++ +P L + EQ+ Sbjct: 119 -DVHLKMNTGMNRLGFLPSEYGKALERLKKIPNVRDISYMTHFANSEAKKHPLLSVKEQL 177 Query: 201 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGLRAAMTL 260 RRF++AT GL G + +NS A L+H ++ +WVR G+MLYGGTPGG TA E+GL AMTL Sbjct: 178 RRFDSATQGLKGDRNLSNSGAILLHPEIRTDWVRPGIMLYGGTPGGKTAAEYGLEPAMTL 237 Query: 261 ESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVIVDGVRTGT 320 S+II +Q I GD++GYGS F A MK G+VACGYADGYPR AP T ++VDGV+T Sbjct: 238 SSEIIQIQHIREGDSIGYGSIFTAKGPMKTGVVACGYADGYPRMAPEGTPIMVDGVKTRL 297 Query: 321 IGRVSMDMLTVDLSHIPGAGVGSRVVLWGEELPIDEVASAAGTIGYELMCALAPRVSVLE 380 +GRVSMDM+TVDL+ +P A VGS+V LWG+ELPIDEVA AAGT+GYELMCAL+ R ++E Sbjct: 298 VGRVSMDMITVDLTPVPDAHVGSKVTLWGKELPIDEVAEAAGTVGYELMCALSLRPRIVE 357 >C3X9R2.1 C3X9R2_OXAFO Alanine racemase EC=5.1.1.1 Length = 359 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/360 (61%), Positives = 275/360 (76%), Gaps = 3/360 (0%) Query: 21 MPRPLVATIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE 80 M RPLVA IDI+A+QHNL+V RS P AK+W VVKA AYGHGL R+VRA DADG ALIE Sbjct: 1 MTRPLVANIDIAAMQHNLSVVRSTVPRAKIWGVVKANAYGHGLERSVRALNDADGFALIE 60 Query: 81 VNYAVQLRELGWSKPILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140 + A+ LRE+GW KPILLLEGFF A ++P+LAR+ + FAVHCDEQI +LE + LD Sbjct: 61 MESAIHLREIGWKKPILLLEGFFYAHELPILARYNIAFAVHCDEQIDMLEKSRLDLPV-- 118 Query: 141 FDVHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANPDLPLAEQV 200 DVHLKMN+GMNRLGF P Y AYERL+K+ VR I+ +THFAN++ + + + EQ+ Sbjct: 119 -DVHLKMNTGMNRLGFLPAEYSKAYERLKKIPNVREISHMTHFANSEVSGHKKMSVEEQL 177 Query: 201 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGLRAAMTL 260 +RF++ +AGL G + +NS A L+H L +WVR GVMLYGGTPGG TA+E+GL+ MTL Sbjct: 178 KRFDSGSAGLPGVRNLSNSGAILLHPQLRTDWVRPGVMLYGGTPGGKTAEEYGLKPVMTL 237 Query: 261 ESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVIVDGVRTGT 320 S+II +Q+I GD+VGYGS F A MKIG+VACGYADGYPR AP T VIVDGV+T Sbjct: 238 SSEIIQIQNINEGDSVGYGSIFTATGPMKIGVVACGYADGYPRMAPEGTHVIVDGVKTRL 297 Query: 321 IGRVSMDMLTVDLSHIPGAGVGSRVVLWGEELPIDEVASAAGTIGYELMCALAPRVSVLE 380 +GRVSMDM+TVDL+ + A VGS+V LWG ELPIDEVA AAGT+GYELMCAL+ R ++E Sbjct: 298 VGRVSMDMITVDLTPVKDAHVGSKVTLWGNELPIDEVAEAAGTVGYELMCALSLRPRIVE 357 >F1VVX4.1 F1VVX4_9BURK Alanine racemase, catabolic Length = 361 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/364 (64%), Positives = 269/364 (73%), Gaps = 6/364 (1%) Query: 21 MPRPLVATIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE 80 MPRPLVA IDISALQHNLA AR R P A WAVVKA AYGHGL R +RAF ADGLAL+E Sbjct: 1 MPRPLVAIIDISALQHNLAEARRRMPAAITWAVVKANAYGHGLERGMRAFGAADGLALVE 60 Query: 81 VNYAVQLRELGWSKPILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140 AV LRELGW KPILLLEG FD D + A+H L+ +HC +QIG LE DA Sbjct: 61 PEAAVALRELGWRKPILLLEGCFDLIDFRLAAQHHLELTIHCPQQIGWLEQTRFDAP--- 117 Query: 141 FDVHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANPDLPLAEQV 200 +VHLKMNSGMNRLGF P+ + AAY+RL+ V I ++THFANAD P + LAEQV Sbjct: 118 VNVHLKMNSGMNRLGFMPQDFAAAYQRLRVNPQVGKIALMTHFANADAADTPGMTLAEQV 177 Query: 201 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGT---AKEFGLRAA 257 RRF +AGL + +NSAA L+HAD+ VR G+MLYGGTPG T A FGLR+A Sbjct: 178 RRFQLGSAGLDAPWNISNSAATLLHADMRSHEVRPGIMLYGGTPGTHTSTPAGAFGLRSA 237 Query: 258 MTLESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVIVDGVR 317 MTL+S++I VQ I PGDAVGYGSRF+A+ M IG+VACGYADGYPRHAP+ T V+VDGVR Sbjct: 238 MTLQSELIAVQQIHPGDAVGYGSRFIAETPMTIGVVACGYADGYPRHAPSGTPVLVDGVR 297 Query: 318 TGTIGRVSMDMLTVDLSHIPGAGVGSRVVLWGEELPIDEVASAAGTIGYELMCALAPRVS 377 T +G VSMDMLTVDL+ IP A GS V LWG+ LPIDEVA AAGTIGYELMCA+APRV Sbjct: 298 TRLVGNVSMDMLTVDLTPIPTAHHGSCVTLWGDGLPIDEVAQAAGTIGYELMCAIAPRVR 357 Query: 378 VLEK 381 V E+ Sbjct: 358 VTER 361