BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0071.p (458 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT91.1 D8IT91_HERSS DNA repair protein radA 848 0.0 A4G5X7.1 A4G5X7_HERAR DNA repair protein radA 812 0.0 A6SY69.1 A6SY69_JANMA DNA repair protein radA 811 0.0 F1VVX5.1 F1VVX5_9BURK DNA repair protein RadA 810 0.0 C3X2S9.1 C3X2S9_OXAFO DNA repair protein radA 765 0.0 >D8IT91.1 D8IT91_HERSS DNA repair protein radA Length = 461 Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/458 (93%), Positives = 445/458 (97%) Query: 1 MAKAKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVETAGVNRYSNQPQGLAQTAPVL 60 MAK KTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVE AG NRYSN PQ LAQTAPVL Sbjct: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 Query: 61 SLVDIEAIDVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALGNISKLKQ 120 SL DIEAIDVPRFGTGIEEFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQAL NIS+LK+ Sbjct: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 Query: 121 VLYVSGEESGSQIALRAKRLAVDAKDLKLQAEIQLEKILSTLAEHKPDVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDA++L+LQAEIQLEKIL+TLAEHKP+VAVIDSIQT+YS Sbjct: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 Query: 181 DALSSAPGSVAQVRECAAQLTRFAKTSDTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTR AKTS TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQ 300 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH++QVPGSCVMVTQ Sbjct: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 360 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 Query: 421 SIAMIPKANAPKQDIEGLKVVAVERIDEALQKIRDIDE 458 SIA+IPKANAPKQ IEGLKV+AVERID+ALQK R+ID+ Sbjct: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREIDD 458 >A4G5X7.1 A4G5X7_HERAR DNA repair protein radA Length = 456 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/455 (89%), Positives = 435/455 (95%), Gaps = 1/455 (0%) Query: 1 MAKAKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVETAGVNRYSNQPQGLAQTAPVL 60 MAKAKTNYTC+ECGG+SNKW GQCP+C WNTLVET+VET G NRYS Q QGLAQ+APVL Sbjct: 1 MAKAKTNYTCSECGGISNKWGGQCPSCNAWNTLVETVVET-GTNRYSAQHQGLAQSAPVL 59 Query: 61 SLVDIEAIDVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALGNISKLKQ 120 SL DIEAIDVPRFGTGIEEFDRVLGGGLV GGVVLIGGDPGIGKSTLLLQAL N+SK+K+ Sbjct: 60 SLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKK 119 Query: 121 VLYVSGEESGSQIALRAKRLAVDAKDLKLQAEIQLEKILSTLAEHKPDVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDAKDLKLQAEIQLEKIL+TLAEHKPDVAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNTLAEHKPDVAVIDSIQTVYS 179 Query: 181 DALSSAPGSVAQVRECAAQLTRFAKTSDTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DALSSAPGSVAQVRECAAQLTR AK + TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRIAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQ 300 GDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDS V G+CVMVTQ Sbjct: 240 GDTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSPVSGACVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SH+PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDTSHLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAI+SSMR++PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAIHSSMRSRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAMIPKANAPKQDIEGLKVVAVERIDEALQKIRD 455 S+A+IPK+NAPKQ IEGL ++AVERIDEAL ++R+ Sbjct: 420 SLALIPKSNAPKQKIEGLTIIAVERIDEALNRVRE 454 >A6SY69.1 A6SY69_JANMA DNA repair protein radA Length = 456 Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/455 (89%), Positives = 436/455 (95%), Gaps = 1/455 (0%) Query: 1 MAKAKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVETAGVNRYSNQPQGLAQTAPVL 60 MAKAKTNYTC+ECGG+SNKW GQCPACG WNTLVET+VE+ G NR+S Q QGLAQTAPVL Sbjct: 1 MAKAKTNYTCSECGGISNKWGGQCPACGSWNTLVETVVES-GSNRFSVQHQGLAQTAPVL 59 Query: 61 SLVDIEAIDVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALGNISKLKQ 120 SL DIEAIDVPRFGTGIEEFDRVLGGGLV GGVVLIGGDPGIGKSTLLLQAL N+S++K+ Sbjct: 60 SLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSRIKK 119 Query: 121 VLYVSGEESGSQIALRAKRLAVDAKDLKLQAEIQLEKILSTLAEHKPDVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDAKDLKLQAEIQLEKIL+TLAEHKPDVAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILTTLAEHKPDVAVIDSIQTVYS 179 Query: 181 DALSSAPGSVAQVRECAAQLTRFAKTSDTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DALSSAPGSVAQVRECAAQLTR AK + TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRIAKQTGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQ 300 GDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHD+ VPG+CVMVTQ Sbjct: 240 GDTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNPVPGACVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SH+PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDTSHLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAI+SSMR++PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAIHSSMRSRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAMIPKANAPKQDIEGLKVVAVERIDEALQKIRD 455 S+A+IPK+NAPKQ IEGL ++ VERIDEAL ++R+ Sbjct: 420 SLALIPKSNAPKQKIEGLTIIGVERIDEALNRVRE 454 >F1VVX5.1 F1VVX5_9BURK DNA repair protein RadA Length = 460 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/457 (89%), Positives = 434/457 (94%), Gaps = 2/457 (0%) Query: 1 MAKAKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVETAGVNRYSNQ--PQGLAQTAP 58 MAK KTN+TC+ECGG+SNKW GQCP+CGQWN+LVET +E+AG+NR S Q P LAQTAP Sbjct: 1 MAKVKTNFTCSECGGISNKWTGQCPSCGQWNSLVETQIESAGINRLSQQAAPVSLAQTAP 60 Query: 59 VLSLVDIEAIDVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALGNISKL 118 VLSL DIEA++VPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQAL N+S+ Sbjct: 61 VLSLADIEAVEVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALANLSRS 120 Query: 119 KQVLYVSGEESGSQIALRAKRLAVDAKDLKLQAEIQLEKILSTLAEHKPDVAVIDSIQTI 178 K+VLYVSGEESG+QIALRAKRLAVDAKDL+LQAEIQLEKIL TLAEHKPDVAVIDSIQT+ Sbjct: 121 KKVLYVSGEESGAQIALRAKRLAVDAKDLQLQAEIQLEKILYTLAEHKPDVAVIDSIQTV 180 Query: 179 YSDALSSAPGSVAQVRECAAQLTRFAKTSDTTIIMVGHVTKEGALAGPRVLEHIVDTVLY 238 YSDALSSAPGSVAQVRECAAQLTR AK + TIIMVGHVTKEGALAGPRVLEHIVDTVLY Sbjct: 181 YSDALSSAPGSVAQVRECAAQLTRTAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLY 240 Query: 239 FEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMV 298 FEGDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHD+QVPGSCVMV Sbjct: 241 FEGDTHSSFRLVRAVKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMV 300 Query: 299 TQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINA 358 TQEGTRPLLVEIQALVD+SH PNARRLSVGL+QNRLAMLLAVLHRHAG+AAFDQDVFINA Sbjct: 301 TQEGTRPLLVEIQALVDTSHAPNARRLSVGLDQNRLAMLLAVLHRHAGVAAFDQDVFINA 360 Query: 359 VGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL 418 VGGVKITEPAADLAV+LAI SS+RNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL Sbjct: 361 VGGVKITEPAADLAVMLAIQSSLRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL 420 Query: 419 GFSIAMIPKANAPKQDIEGLKVVAVERIDEALQKIRD 455 GFSIAMIPKANAPK +EGL ++AVERIDEAL+KIRD Sbjct: 421 GFSIAMIPKANAPKGKVEGLTIIAVERIDEALEKIRD 457 >C3X2S9.1 C3X2S9_OXAFO DNA repair protein radA Length = 456 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/456 (84%), Positives = 421/456 (92%) Query: 1 MAKAKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVETAGVNRYSNQPQGLAQTAPVL 60 MAKAK YTCTECGG+S+KWAG+CPACGQWNTLVETLVE+A NR+S QGLAQTAPVL Sbjct: 1 MAKAKIQYTCTECGGISSKWAGKCPACGQWNTLVETLVESAPANRFSGNRQGLAQTAPVL 60 Query: 61 SLVDIEAIDVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALGNISKLKQ 120 SL DI+AIDVPRF +GI EFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQAL N++ K Sbjct: 61 SLSDIDAIDVPRFHSGIGEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALVNLASSKN 120 Query: 121 VLYVSGEESGSQIALRAKRLAVDAKDLKLQAEIQLEKILSTLAEHKPDVAVIDSIQTIYS 180 VLYVSGEESGSQ+ALRAKRL + A +L+LQAEIQLEKIL TL+EHKP+VAVIDSIQT+YS Sbjct: 121 VLYVSGEESGSQVALRAKRLGLTAANLQLQAEIQLEKILGTLSEHKPEVAVIDSIQTLYS 180 Query: 181 DALSSAPGSVAQVRECAAQLTRFAKTSDTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTRFAK S TTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 181 DALTSAPGSVAQVRECAAQLTRFAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQ 300 GDTHSSFRL+RAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+ Q+ GSCVM T Sbjct: 241 GDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHERQIAGSCVMATL 300 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 360 EG RPLLVEIQALVD+S PNARRLSVGLEQNRLAMLLAV+HRHA IAA+DQDVFINAVG Sbjct: 301 EGMRPLLVEIQALVDTSPTPNARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVG 360 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GV+I+EPAADLAVLLAI+SS+RNKPLPRGLVVFGEVGLAGEIRPAPRGQ+RLREA KLGF Sbjct: 361 GVRISEPAADLAVLLAIHSSLRNKPLPRGLVVFGEVGLAGEIRPAPRGQDRLREAVKLGF 420 Query: 421 SIAMIPKANAPKQDIEGLKVVAVERIDEALQKIRDI 456 SIA+IPK+NAPKQ EGL V+ VERIDEA +IR++ Sbjct: 421 SIALIPKSNAPKQPFEGLTVIGVERIDEAFDRIREL 456