BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0040.p         (178 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IU06.1 D8IU06_HERSS Peptide deformylase 1 EC=3.5.1.88               290   8e-77
A6SZQ6.1 A6SZQ6_JANMA Peptide deformylase 3 EC=3.5.1.88               268   2e-70
F1W2Z8.1 F1W2Z8_9BURK Peptide deformylase                             268   3e-70
Q1LNG4.1 Q1LNG4_RALME Peptide deformylase 1 EC=3.5.1.88               263   9e-69
B5WW20.1 B5WW20_9BURK Peptide deformylase 2 EC=3.5.1.88               263   1e-68

>D8IU06.1 D8IU06_HERSS Peptide deformylase 1 EC=3.5.1.88
          Length = 178

 Score =  290 bits (741), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 157/178 (88%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           MAIREILKMGDPRLLRQA+PV +FGTPE+  L+ DMF+TMRAVNGAG    +    +QLV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           IFGF +NQRYPDAP VPETVLINP LTPLS+++EEGWEGCLSVPG+RGVVPRWSRLRY+G
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
           +D+ G  IDR+V+GFHARVVQHECDHL G+LYPMRI+DF RFGFTE+LFPELDP+ DD
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178


>A6SZQ6.1 A6SZQ6_JANMA Peptide deformylase 3 EC=3.5.1.88
          Length = 178

 Score =  268 bits (686), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 146/178 (82%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           M +REILKMGDPRLLR AEPV++FGTPE+D LI DMF+TM A NGAG    +    ++LV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           I+GFK+N RYPDAP VPETVLINP L PLS E E+GWEGCLSVPGLRGVVPR+S L Y+G
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120

Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
            D+ GN I R  DGFHARVVQHECDHL G+LYPMRI D ++FG+ +ILFP+LDPNDDD
Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDLSQFGYVDILFPDLDPNDDD 178


>F1W2Z8.1 F1W2Z8_9BURK Peptide deformylase
          Length = 178

 Score =  268 bits (684), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/178 (71%), Positives = 144/178 (80%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           M +REILKMGDPRLLR AEPV +F TP M  LIADMFETM AVNGAG    +    +QLV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLV 60

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           I+G + N RYP+APEVPET+LINP LTPLSDE  E WEGCLSVPGLRGVVPRW  L YEG
Sbjct: 61  IYGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRWQALHYEG 120

Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
           +D+ G  I R VDGFHARVVQHECDHLIGVLYPMR+ DF+RFG+T +LFPELD ++DD
Sbjct: 121 VDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMRVTDFSRFGYTSVLFPELDGDEDD 178


>Q1LNG4.1 Q1LNG4_RALME Peptide deformylase 1 EC=3.5.1.88
          Length = 177

 Score =  263 bits (671), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 144/176 (81%)

Query: 3   IREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLVIF 62
           IR+ILKMGD RLL+QA PV QF TPE+  LI DMF+TM   NGAG    +    +Q+VIF
Sbjct: 2   IRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIF 61

Query: 63  GFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEGMD 122
           GF +N RYPDAP VP+TVLINP+L PLSDE ++GWEGCLSVPGLRGVVPR++RL+Y G D
Sbjct: 62  GFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGFD 121

Query: 123 EKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
             GNRI+R  + FHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPEL PN DD
Sbjct: 122 MMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELPPNYDD 177


>B5WW20.1 B5WW20_9BURK Peptide deformylase 2 EC=3.5.1.88
          Length = 177

 Score =  263 bits (671), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 142/176 (80%)

Query: 3   IREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLVIF 62
           I +ILKMGDPRLLR AEPV  F TPE+  L+ADMFETM A NGAG    +    +Q+VIF
Sbjct: 2   IHDILKMGDPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVIF 61

Query: 63  GFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEGMD 122
           GF  N+RYPDAP VPETVLINPT+TP+S + EE WEGCLSVPGLRGVV R+S +RY G D
Sbjct: 62  GFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFD 121

Query: 123 EKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
           + GN IDR  +GFHARVVQHECDHLIG LYPMRI DF++FGFTE+LFP+LDPN DD
Sbjct: 122 QFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEVLFPDLDPNSDD 177