BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0019.p (180 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXJ1.1 D8IXJ1_HERSS Response regulator consisting of a CheY-li... 284 4e-75 Q8Y3E0.1 Q8Y3E0_RALSO Putative response regulator/transcriptiona... 238 2e-61 D8P185.1 D8P185_RALSO Putative response regulator/transcriptiona... 237 5e-61 B5S7B9.1 B5S7B9_RALSO Response regulator protein 237 6e-61 A3RT75.1 A3RT75_RALSO PrrA 237 6e-61 >D8IXJ1.1 D8IXJ1_HERSS Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain, protein Length = 182 Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 143/182 (78%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 1 MSAAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDS 60 MSAAFLILDDNDVFA TLARSL+RRGF A VAHSGE AL+AA F YATIDLQL++DS Sbjct: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 Query: 61 GLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSALEHSAND 120 GLQW++PLR+ LPHARLLVLTGYASIATTVQAIK+GADNYLAKPAN+DSILSAL HS N Sbjct: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGNG 120 Query: 121 ASADLD--HTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKRPV 178 A + A+PLS+ERLEWEHIQRVL E++GNISSTARALNMHRRTLQRKLAKRPV Sbjct: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 Query: 179 AK 180 A+ Sbjct: 181 AR 182 >Q8Y3E0.1 Q8Y3E0_RALSO Putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) Length = 192 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/189 (65%), Positives = 143/189 (75%), Gaps = 12/189 (6%) Query: 3 AAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQL------ 56 A FLILDD+DVFA TLAR+L+RRGF+ +AH+G +AL A T FAY T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 57 -----QQDSGLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSIL 111 DSGL WIAPLR+ LP AR+LVLTGYASIAT VQA+K GAD YLAKPAN+DSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALEHSANDASADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQR 171 AL+ ++A A+ + APLSV RLEWEHIQRVL E+ GNIS+TARALNMHRRTLQR Sbjct: 125 LALQVGVSEAVAE-QTMENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTLQR 183 Query: 172 KLAKRPVAK 180 KL KRPVAK Sbjct: 184 KLGKRPVAK 192 >D8P185.1 D8P185_RALSO Putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) Length = 204 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 123/189 (65%), Positives = 142/189 (75%), Gaps = 12/189 (6%) Query: 3 AAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQL------ 56 A FLILDD+DVFA TLAR+L+RRGF+ +AH+G +AL A FAY T+DL L Sbjct: 17 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQMPFAYVTVDLHLAASDRG 76 Query: 57 -----QQDSGLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSIL 111 DSGL WIAPLR+ LP AR+LVLTGYASIAT VQA+K GAD YLAKPAN+DSIL Sbjct: 77 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 136 Query: 112 SALEHSANDASADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQR 171 AL+ ++A A+ + APLSV RLEWEHIQRVL E+ GNIS+TARALNMHRRTLQR Sbjct: 137 LALQVGVSEAVAE-QTMENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTLQR 195 Query: 172 KLAKRPVAK 180 KL KRPVAK Sbjct: 196 KLGKRPVAK 204 >B5S7B9.1 B5S7B9_RALSO Response regulator protein Length = 192 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 123/189 (65%), Positives = 142/189 (75%), Gaps = 12/189 (6%) Query: 3 AAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQL------ 56 A FLILDD+DVFA TLAR+L+RRGF+ +AH+G +AL A FAY T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQAPFAYVTVDLHLAASDRG 64 Query: 57 -----QQDSGLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSIL 111 DSGL WIAPLR+ LP AR+LVLTGYASIAT VQA+K GAD YLAKPAN+DSIL Sbjct: 65 LTPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALEHSANDASADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQR 171 AL+ ++A A+ + APLSV RLEWEHIQRVL E+ GNIS+TARALNMHRRTLQR Sbjct: 125 LALQVGVSEAVAE-QTMENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTLQR 183 Query: 172 KLAKRPVAK 180 KL KRPVAK Sbjct: 184 KLGKRPVAK 192 >A3RT75.1 A3RT75_RALSO PrrA Length = 192 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 123/189 (65%), Positives = 142/189 (75%), Gaps = 12/189 (6%) Query: 3 AAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQL------ 56 A FLILDD+DVFA TLAR+L+RRGF+ +AH+G +AL A FAY T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQAPFAYVTVDLHLAASDRG 64 Query: 57 -----QQDSGLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSIL 111 DSGL WIAPLR+ LP AR+LVLTGYASIAT VQA+K GAD YLAKPAN+DSIL Sbjct: 65 LTPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALEHSANDASADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQR 171 AL+ ++A A+ + APLSV RLEWEHIQRVL E+ GNIS+TARALNMHRRTLQR Sbjct: 125 LALQVGVSEAVAE-QTMENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTLQR 183 Query: 172 KLAKRPVAK 180 KL KRPVAK Sbjct: 184 KLGKRPVAK 192