BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0002.p (375 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUY1.1 D8IUY1_HERSS ABC-type branched-chain amino acid transpo... 654 0.0 B0RKH1.1 B0RKH1_HERSE Periplasmic component protein 654 0.0 B9Z059.1 B9Z059_9NEIS Extracellular ligand-binding receptor 458 e-127 Q21UN1.1 Q21UN1_RHOFD Extracellular ligand-binding receptor 424 e-117 E6UZZ3.1 E6UZZ3_VARPD Extracellular ligand-binding receptor 423 e-116 >D8IUY1.1 D8IUY1_HERSS ABC-type branched-chain amino acid transport system, periplasmic component protein Length = 378 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/378 (84%), Positives = 348/378 (92%), Gaps = 3/378 (0%) Query: 1 MYNR---MHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERL 57 M+ R ++IIAASLA+IPAFA AQE Q VKIGFSSPLTGPQASAGKDNQGGL MA+ERL Sbjct: 1 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERL 60 Query: 58 NTQGLVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYN 117 N Q + +GGKKIKF+++AEDDQADPKSGV VAQKL DQGVKAIVGPYNSGVTIPASRVYN Sbjct: 61 NAQPITVGGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYN 120 Query: 118 DAGIVTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYG 177 DAGIV ATVASNPKITQQGFATL+RVAASDSQLGGKMALYAAKELK K V+VIDDRTAYG Sbjct: 121 DAGIVVATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYG 180 Query: 178 QGLAEEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKR 237 QGLA+EFIK+A+ANGI VVS DFTNDKATDFTAILTSIKGKKP AVF+GGYAPQGGPIKR Sbjct: 181 QGLAQEFIKVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKR 240 Query: 238 QMKQLGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKF 297 QMKQLG+D LMGGDGICSPEMGRLGGDAIGESVYCTQGGT+L+KAKEGK F+D+YQKK+ Sbjct: 241 QMKQLGVDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKY 300 Query: 298 GRPAEVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQS 357 RPAE YAVSFYDGMM+IAQAMK ANSV+PK +GPALAKI YKGVAGQY+FD HDLKQS Sbjct: 301 NRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQS 360 Query: 358 PVTIFRFKDGVPVALTSY 375 PVT++RFKDG+PV LTSY Sbjct: 361 PVTVYRFKDGLPVPLTSY 378 >B0RKH1.1 B0RKH1_HERSE Periplasmic component protein Length = 378 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/378 (84%), Positives = 348/378 (92%), Gaps = 3/378 (0%) Query: 1 MYNR---MHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERL 57 M+ R ++IIAASLA+IPAFA AQE Q VKIGFSSPLTGPQASAGKDNQGGL MA+ERL Sbjct: 1 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERL 60 Query: 58 NTQGLVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYN 117 N Q + +GGKKIKF+++AEDDQADPKSGV VAQKL DQGVKAIVGPYNSGVTIPASRVYN Sbjct: 61 NAQPITVGGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYN 120 Query: 118 DAGIVTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYG 177 DAGIV ATVASNPKITQQGFATL+RVAASDSQLGGKMALYAAKELK K V+VIDDRTAYG Sbjct: 121 DAGIVVATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYG 180 Query: 178 QGLAEEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKR 237 QGLA+EFIK+A+ANGI VVS DFTNDKATDFTAILTSIKGKKP AVF+GGYAPQGGPIKR Sbjct: 181 QGLAQEFIKVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKR 240 Query: 238 QMKQLGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKF 297 QMKQLG+D LMGGDGICSPEMGRLGGDAIGESVYCTQGGT+L+KAKEGK F+D+YQKK+ Sbjct: 241 QMKQLGVDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKY 300 Query: 298 GRPAEVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQS 357 RPAE YAVSFYDGMM+IAQAMK ANSV+PK +GPALAKI YKGVAGQY+FD HDLKQS Sbjct: 301 NRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQS 360 Query: 358 PVTIFRFKDGVPVALTSY 375 PVT++RFKDG+PV LTSY Sbjct: 361 PVTVYRFKDGLPVPLTSY 378 >B9Z059.1 B9Z059_9NEIS Extracellular ligand-binding receptor Length = 381 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 213/369 (57%), Positives = 284/369 (76%) Query: 2 YNRMHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQG 61 + + AA LA+ P A E TVKIG + PLTGPQA+ GKD++ GL+MA++RLN QG Sbjct: 7 FRTKFVFAAGLALTPLLGFAAEEMTVKIGLTGPLTGPQAAIGKDHENGLRMAMDRLNAQG 66 Query: 62 LVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAGI 121 +V+GGKK++FE+++EDD ADP++G+ VAQ+ VD VKA++GPYNSGV IP S++ NDAGI Sbjct: 67 IVVGGKKVRFEMMSEDDGADPRTGMTVAQRFVDANVKAVIGPYNSGVAIPISKLLNDAGI 126 Query: 122 VTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGLA 181 V ATVASNPK+TQ G+ ++R+ ASD+QLG KM ++AAK LK K+ ++IDDRTAYGQG+A Sbjct: 127 VMATVASNPKVTQNGYPYVFRIGASDTQLGTKMGVFAAKNLKAKSFAIIDDRTAYGQGVA 186 Query: 182 EEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMKQ 241 +EFIK A+ANGI++V+++FT DK+TDF+AILTSIK KP +F GGY QGGP++RQM + Sbjct: 187 DEFIKAAKANGIQIVAREFTTDKSTDFSAILTSIKAAKPDGIFYGGYYSQGGPMRRQMAR 246 Query: 242 LGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRPA 301 LG+ A L+GGDGIC+ E+ +LGG + VYC QGG +LE+ EGK F +Y+K+F Sbjct: 247 LGLKAYLLGGDGICNEELAKLGGTTVDGGVYCPQGGPVLEQTSEGKQFTTEYKKRFSIEP 306 Query: 302 EVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVTI 361 VY S YDG+ +IA+AM+ ANSVEPK Y ALA +GVAG Y+FDDK DLK SP+T+ Sbjct: 307 LVYGASMYDGLNIIAKAMQKANSVEPKQYRAALAASNQQGVAGTYQFDDKRDLKNSPITV 366 Query: 362 FRFKDGVPV 370 + FK+G PV Sbjct: 367 YSFKNGQPV 375 >Q21UN1.1 Q21UN1_RHOFD Extracellular ligand-binding receptor Length = 377 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/366 (54%), Positives = 277/366 (75%), Gaps = 4/366 (1%) Query: 13 AIIPAFAS---AQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQGLVIGGKKI 69 A+ AFAS AQE Q V IG + PL+G A AGKDN+ G+++A+E LN++ + +GGK + Sbjct: 13 ALAVAFASHAYAQE-QKVVIGLTGPLSGANAFAGKDNENGVRLAIEDLNSKKITVGGKML 71 Query: 70 KFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAGIVTATVASN 129 KFE+ +EDDQ DP++GV VAQKLVD GVK ++GPY SGV +PASR+Y+ G + +TV +N Sbjct: 72 KFELQSEDDQCDPRAGVMVAQKLVDSGVKFVMGPYCSGVAVPASRLYSQGGAMLSTVGTN 131 Query: 130 PKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGLAEEFIKLAQ 189 PK+TQ G+ L+R+ ASD+Q+G MA YAAK LK+K+V+VIDDRTA+GQG+AEEF K A+ Sbjct: 132 PKVTQGGYKNLFRIIASDNQIGASMAAYAAKVLKVKSVAVIDDRTAFGQGVAEEFTKEAK 191 Query: 190 ANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMKQLGIDALLM 249 G+ VV ++FT DKATDFTAILT++K KKP+A+F GGYAPQ GP+ RQ++QL I L+ Sbjct: 192 NLGLSVVGQEFTTDKATDFTAILTTLKAKKPEAIFFGGYAPQAGPLARQLQQLAIKTKLL 251 Query: 250 GGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRPAEVYAVSFY 309 GGD +CSPEMG+LGG+A+ + V+C QGG+IL+KA G F ++K+FG +VYA FY Sbjct: 252 GGDTLCSPEMGKLGGEAVNDVVFCAQGGSILDKAANGPTFKAKFKKRFGLDPDVYAAPFY 311 Query: 310 DGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVTIFRFKDGVP 369 D M I ++M+ ANS++P G + K YKG+AG Y +DDK ++KQ+P+T++ FK+ +P Sbjct: 312 DQTMFIGESMQKANSIDPNKVGAEIYKSTYKGIAGNYAYDDKGNMKQAPITVYTFKNALP 371 Query: 370 VALTSY 375 V L SY Sbjct: 372 VPLASY 377 >E6UZZ3.1 E6UZZ3_VARPD Extracellular ligand-binding receptor Length = 380 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/357 (58%), Positives = 271/357 (75%), Gaps = 1/357 (0%) Query: 19 ASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQGLVIGGKKIKFEIVAEDD 78 ASAQE Q VKIG S PL+GP A AGKDN+ G+++A+E LN + L +GGK +KFE+V+EDD Sbjct: 25 ASAQE-QVVKIGHSGPLSGPNAFAGKDNENGVRLAIEELNAKKLSVGGKTLKFELVSEDD 83 Query: 79 QADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAGIVTATVASNPKITQQGFA 138 Q D K+GV VAQK VD GVK ++GPY SGV IPASR+Y+D G + +TV +NPK+TQ G+ Sbjct: 84 QCDAKTGVSVAQKFVDDGVKFVMGPYCSGVAIPASRIYSDGGTMVSTVGTNPKVTQGGYK 143 Query: 139 TLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGLAEEFIKLAQANGIKVVSK 198 LYR+ ASD+Q+G MA+YAAKELK+K V VIDDRTA+GQGLAEEF K AQ G+ VV K Sbjct: 144 NLYRIIASDNQIGSSMAVYAAKELKVKKVGVIDDRTAFGQGLAEEFTKEAQKQGLTVVGK 203 Query: 199 DFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMKQLGIDALLMGGDGICSPE 258 +FT DKA DFTAILT++K K P+A+F GGYAPQ P+ RQMKQL + L+GGD +CSP Sbjct: 204 EFTTDKAVDFTAILTNMKAKAPEAIFFGGYAPQAAPMARQMKQLAVPGKLLGGDTVCSPA 263 Query: 259 MGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRPAEVYAVSFYDGMMVIAQA 318 G+LGGDA+ + VYC QGG+ILEKA+ G AF + ++K+F A+ YA S+YD ++ I ++ Sbjct: 264 TGKLGGDAVNDLVYCAQGGSILEKAQSGPAFKEKFKKRFNADADAYAASYYDQVLFIGES 323 Query: 319 MKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVTIFRFKDGVPVALTSY 375 MK ANS++P G L K YKGVA Y +DDK ++KQ+P+T+F FK+ PV + SY Sbjct: 324 MKKANSIDPDKVGAQLYKDTYKGVAATYSYDDKGNMKQAPITVFTFKNAAPVPIASY 380