BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0242.p         (78 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T449.1 A6T449_JANMA Primosomal protein N'                            94   8e-18
A4GAE9.1 A4GAE9_HERAR Primosomal protein N' EC=3.6.1.-                 91   8e-17
F1W2H5.1 F1W2H5_9BURK Helicase PriA essential for oriC/DnaA-inde...    87   1e-15
D8IVL6.1 D8IVL6_HERSS Primosomal protein N' (Replication factor ...    82   3e-14
C3XBI2.1 C3XBI2_OXAFO Primosomal protein N' directs replication ...    80   8e-14

>A6T449.1 A6T449_JANMA Primosomal protein N'
          Length = 683

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 50/58 (86%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGVW 58
           LYGVTGSGKTEVYLQAAA+ILA  +     AQ+L+LVPEINLTPQLE+N+RARFPGV 
Sbjct: 163 LYGVTGSGKTEVYLQAAAQILAHSKEDDNPAQILILVPEINLTPQLEANVRARFPGVM 220


>A4GAE9.1 A4GAE9_HERAR Primosomal protein N' EC=3.6.1.-
          Length = 682

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 48/57 (84%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGV 57
           LYGVTGSGKTEVYLQAAA+ILA        AQ+L+LVPEINLTPQLE+N+RARFP V
Sbjct: 162 LYGVTGSGKTEVYLQAAAQILAHSSDEHNPAQILILVPEINLTPQLEANVRARFPDV 218


>F1W2H5.1 F1W2H5_9BURK Helicase PriA essential for oriC/DnaA-independent DNA
           replication
          Length = 650

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGVW 58
           LYGVTGSGKTEVYL AAA +L+Q       AQ+L++VPEINLTPQLE NIRARFP V 
Sbjct: 134 LYGVTGSGKTEVYLHAAATVLSQANNLDNPAQILIMVPEINLTPQLEGNIRARFPTVM 191


>D8IVL6.1 D8IVL6_HERSS Primosomal protein N' (Replication factor
           Y)-superfamily II helicase protein
          Length = 708

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFP 55
           LYGVTGSGKTEVYLQAAA IL +   +GE AQ+LVLVPEINLTPQLE NIRARFP
Sbjct: 192 LYGVTGSGKTEVYLQAAAAILRRAAESGERAQILVLVPEINLTPQLEGNIRARFP 246


>C3XBI2.1 C3XBI2_OXAFO Primosomal protein N' directs replication fork
           assembly at D-loops
          Length = 677

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 52/84 (61%), Gaps = 13/84 (15%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGV--- 57
           LYGVTGSGKTE+YLQA    L Q +A     QVL++VPEINLTPQLE ++R+RFPGV   
Sbjct: 164 LYGVTGSGKTEIYLQAIEEKLKQSDAM----QVLIMVPEINLTPQLEVSVRSRFPGVTIA 219

Query: 58  ------WRCRKSANWRSCRSAVAR 75
                     +  NW    + VAR
Sbjct: 220 TLHSRLTESERLKNWLQIHTGVAR 243