BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0224.p (232 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9BRY2.1 A9BRY2_DELAS Two component transcriptional regulator, w... 280 9e-74 Q13XF8.1 Q13XF8_BURXL Two component transcriptional regulator, w... 271 6e-71 B5WHF1.1 B5WHF1_9BURK Two component transcriptional regulator, w... 270 1e-70 D4DYB8.1 D4DYB8_SEROD Two component response regulator 268 5e-70 Q391M3.1 Q391M3_BURS3 Two component transcriptional regulator, w... 268 5e-70 >A9BRY2.1 A9BRY2_DELAS Two component transcriptional regulator, winged helix family Length = 256 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 139/221 (62%), Positives = 172/221 (77%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 MNRIAL+EDH R+A L++++LA +GIETDV+ I+ A + Y V+V+DR LPDGDG Sbjct: 29 MNRIALIEDHARLATLVSRSLANSGIETDVFHQISTAWLALQDIDYGVIVIDRGLPDGDG 88 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L LV++LRA G TPCLMLTARDAL DRV GLEAGADDYL KPF MEE++ARVRAL+RRP Sbjct: 89 LQLVQRLRAAGRSTPCLMLTARDALSDRVGGLEAGADDYLTKPFPMEELIARVRALLRRP 148 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 +Q L+P+ + + P+ ACM +++L AELQ+ML+LVR AG +VRR+ LEAAAW Sbjct: 149 ALVQELAPQLGDISISPQQACMHCAGSAIALPPAELQIMLSLVRKAGATVRRSTLEAAAW 208 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G+S VTPNALDVALHRLRRKLAA S ++I NIRG GYAL Sbjct: 209 GMSSVVTPNALDVALHRLRRKLAAAGSCMEIVNIRGQGYAL 249 >Q13XF8.1 Q13XF8_BURXL Two component transcriptional regulator, winged helix family Length = 237 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 135/232 (58%), Positives = 173/232 (74%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 M+R+A++EDHER+A ++ +ALA G+E DV+ I+ A G ++ Y VL++DR LPDGDG Sbjct: 1 MSRVAIVEDHERLADMVGQALAGVGVEADVFRNISEATYGVSRADYAVLIVDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L +R+LRA G +TPCLMLTARDALHDRV GLE+GADDY+ KPF+M E+VARVR LMRRP Sbjct: 61 LTFLRELRAAGRMTPCLMLTARDALHDRVDGLESGADDYVTKPFAMSELVARVRTLMRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 V L +L +A + V+P MR G SV LA AELQ+ML LV A G++VR ALE AAW Sbjct: 121 VTLTTLVASYADVVVDPRQREMRCGVLSVLLAPAELQIMLCLVEAGGRTVRHLALEHAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYALLDNSKQEQLQS 232 GL E VTPNALDV +HRLR+KL AI + +++N+RG G+AL D + Q Q S Sbjct: 181 GLGEAVTPNALDVTVHRLRKKLLAINARARLTNLRGAGFALEDATAQRQQPS 232 >B5WHF1.1 B5WHF1_9BURK Two component transcriptional regulator, winged helix family Length = 243 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/221 (59%), Positives = 172/221 (77%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 M+R+AL+EDH+R+AA++ +AL+ AGIETD+++T++ A G T+ Y VL++DR LPDGDG Sbjct: 1 MSRVALIEDHQRLAAMVRQALSVAGIETDLFSTVSEARYGVTRGDYAVLIIDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L +R LRA G + PCLMLTARDALHDRV GLE+GADDY+ KPF+M E+VARVR LMRRP Sbjct: 61 LTFLRGLRAAGQMIPCLMLTARDALHDRVDGLESGADDYVTKPFAMNELVARVRTLMRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 L L FA + V+P+ M G +V+LA AELQ+ML LV+AAG++VR ALE AAW Sbjct: 121 PVLAELVLSFADITVDPQQRAMHCGAGTVTLAQAELQIMLCLVKAAGRTVRHAALEHAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G+ E VTPNAL+V LHRLR+KL A+ S +++NIRG G+AL Sbjct: 181 GVGEAVTPNALEVTLHRLRKKLTALGSTTRLANIRGAGFAL 221 >D4DYB8.1 D4DYB8_SEROD Two component response regulator Length = 228 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 168/225 (74%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 M+RI L+EDH+++A LI K LAAAGI TD A + Q+AY L++DR LPDGDG Sbjct: 1 MSRILLVEDHQQLAKLIGKGLAAAGIATDQVERSEQAWSATRQIAYQGLIIDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L L+R+LR PCL+LTARDALHDRV GLEAGADDYLPKPF+M E+VARVRAL+RRP Sbjct: 61 LSLLRRLRQASSPVPCLILTARDALHDRVEGLEAGADDYLPKPFAMAELVARVRALLRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 Q L P + + + EA M+ GD+S++LA AE+Q+M AL+ G+ +RR+A+EAA W Sbjct: 121 ATRQPLQPGYQDVVLSLEAGAMQCGDKSITLAPAEMQIMSALIHRQGEVLRRSAMEAAGW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYALLDNS 225 GLS +TPNALDVALHRLRRKL A+ S LQI N+RGHGYAL N+ Sbjct: 181 GLSVAITPNALDVALHRLRRKLTAVGSSLQIVNVRGHGYALRKNA 225 >Q391M3.1 Q391M3_BURS3 Two component transcriptional regulator, winged helix family Length = 224 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 173/223 (77%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 M R+A++EDH+R+A L+++ALAAAGIE+D++ + AA G Q Y +L++DR LPDG+G Sbjct: 1 MPRVAIVEDHQRLADLLSQALAAAGIESDLFGNVREAAYGVDQADYALLIIDRGLPDGEG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L +R LRA G +TPCLMLTARDAL DR+ GLE+GADDY+ KPF M E+VARVR LMRRP Sbjct: 61 LAFLRTLRAAGRMTPCLMLTARDALRDRIDGLESGADDYVTKPFEMCELVARVRTLMRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 V L +L FA + V+P MR GD +V LA AELQ+ML L+ AAG++VR + LE AAW Sbjct: 121 VLLTTLVASFADVTVDPAQRAMRCGDRTVLLAPAELQVMLCLIEAAGRTVRHSILEHAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYALLD 223 GL E VTPNAL+V +HRLR+KLA+I++ ++++NIRG G+AL D Sbjct: 181 GLGEAVTPNALEVTVHRLRKKLASIDATMRLTNIRGAGFALQD 223