BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0207.p (256 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXM6.1 D8IXM6_HERSS ABC-type branched-chain amino acid transpo... 465 e-129 F1W4E0.1 F1W4E0_9BURK Urea ABC transporter, ATPase protein UrtD 444 e-123 F2MX83.1 F2MX83_PSEST Branched-chain amino acid ABC transporter,... 408 e-112 F2KJ12.1 F2KJ12_PSEBR Putative High-affinity branched-chain amin... 407 e-112 Q87XV0.1 Q87XV0_PSESM Branched-chain amino acid ABC transporter,... 402 e-110 >D8IXM6.1 D8IXM6_HERSS ABC-type branched-chain amino acid transport system, ATPase component protein Length = 255 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 239/256 (93%), Positives = 248/256 (96%), Gaps = 1/256 (0%) Query: 1 MSNAPIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLD 60 MS IGFES HPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGA GKTTVLD Sbjct: 1 MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGA-GKTTVLD 59 Query: 61 LICGKTQATSGSIRFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR 120 LICGKT+ATSGSI+FNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR Sbjct: 60 LICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR 119 Query: 121 KVFGALTFKRTADVVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLM 180 KVFGALTFKR+ DVVARVE+VAAEIFL++ L+TQADLLSHGQKQWLEIGMLLMQEPELLM Sbjct: 120 KVFGALTFKRSPDVVARVEAVAAEIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLM 179 Query: 181 LDEPVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM 240 LDEPVAGMSVSEREKTA+LLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM Sbjct: 180 LDEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM 239 Query: 241 DKVQSDPKVIDVYLGH 256 +KVQSDPKVIDVYLGH Sbjct: 240 EKVQSDPKVIDVYLGH 255 >F1W4E0.1 F1W4E0_9BURK Urea ABC transporter, ATPase protein UrtD Length = 255 Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/256 (83%), Positives = 235/256 (91%), Gaps = 1/256 (0%) Query: 1 MSNAPIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLD 60 MSNAPIG ++ + PVLA+E LTVSFDGFKAVD LNLYV RNEV VVIGPNGA GKTTVLD Sbjct: 1 MSNAPIGVKNPNRPVLAVEGLTVSFDGFKAVDNLNLYVNRNEVHVVIGPNGA-GKTTVLD 59 Query: 61 LICGKTQATSGSIRFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR 120 LICGKTQAT+GSIRFN ELTKM+E+ IVR GVGRKFQTPSIYENLSVF+NLEMSFPRGR Sbjct: 60 LICGKTQATAGSIRFNERELTKMAEYDIVRAGVGRKFQTPSIYENLSVFDNLEMSFPRGR 119 Query: 121 KVFGALTFKRTADVVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLM 180 VFGAL F+R+ADV+ARV VAAEIFL + L+ QADLLSHGQKQWLEIGMLLMQEPELLM Sbjct: 120 SVFGALVFERSADVIARVNEVAAEIFLSEQLHAQADLLSHGQKQWLEIGMLLMQEPELLM 179 Query: 181 LDEPVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM 240 LDEPVAGMSVSER KTA+LLGRISQGRSV+VIEHDM+FVKSIAH+VTVLHQGK+LAEGSM Sbjct: 180 LDEPVAGMSVSERSKTAELLGRISQGRSVLVIEHDMEFVKSIAHRVTVLHQGKVLAEGSM 239 Query: 241 DKVQSDPKVIDVYLGH 256 + VQ++PKVI+VYLGH Sbjct: 240 ESVQANPKVIEVYLGH 255 >F2MX83.1 F2MX83_PSEST Branched-chain amino acid ABC transporter, ATP-binding protein Length = 252 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 201/253 (79%), Positives = 224/253 (88%), Gaps = 2/253 (0%) Query: 4 APIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLIC 63 +P GF+S PVLAIE LTVSFDGFKAVD LNLY+ RNEVRVVIGPNGA GKTT+LDLIC Sbjct: 2 SPTGFQSP-KPVLAIEGLTVSFDGFKAVDDLNLYLDRNEVRVVIGPNGA-GKTTLLDLIC 59 Query: 64 GKTQATSGSIRFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVF 123 GKT+AT+GSI FN ELT+M E IVR GVGRKFQ PSIYENLSVFENLEMS+P GRKVF Sbjct: 60 GKTRATAGSIEFNGRELTRMKEFDIVRAGVGRKFQNPSIYENLSVFENLEMSYPAGRKVF 119 Query: 124 GALTFKRTADVVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLMLDE 183 GAL FKR+ADV+ARVE VAAEI L L+ +A LLSHGQKQWLEIGMLLMQEPELLMLDE Sbjct: 120 GALFFKRSADVIARVEEVAAEIGLADQLHDEAGLLSHGQKQWLEIGMLLMQEPELLMLDE 179 Query: 184 PVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMDKV 243 PVAGMSVSER +TA+LL RISQGRSV+VIEHDM+FVKSIAH+VTVLHQG++LAEGSM+ V Sbjct: 180 PVAGMSVSERAQTAELLKRISQGRSVLVIEHDMEFVKSIAHRVTVLHQGRLLAEGSMEAV 239 Query: 244 QSDPKVIDVYLGH 256 Q +PKV++VYLGH Sbjct: 240 QKNPKVVEVYLGH 252 >F2KJ12.1 F2KJ12_PSEBR Putative High-affinity branched-chain amino acid ABC transporter, ATP-binding component Length = 252 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/251 (79%), Positives = 224/251 (89%), Gaps = 2/251 (0%) Query: 6 IGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLICGK 65 +GF+ + PVL IE LTVSFDGFKAVD LNLY+ RNEVRVVIGPNGA GKTTVLDLICGK Sbjct: 4 VGFQ-MNKPVLVIEGLTVSFDGFKAVDNLNLYIDRNEVRVVIGPNGA-GKTTVLDLICGK 61 Query: 66 TQATSGSIRFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGA 125 T+ATSGSI+F+ ELTKM E+ IVR GVGRKFQ PSIYENL+VFENLEMS+P GRKVFGA Sbjct: 62 TRATSGSIQFDGKELTKMREYNIVRAGVGRKFQNPSIYENLTVFENLEMSYPAGRKVFGA 121 Query: 126 LTFKRTADVVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPV 185 L FKR+A V+ARVE VA EIFL + L QADLLSHGQKQWLEIGMLLMQ P+LLMLDEPV Sbjct: 122 LFFKRSAAVIARVEEVAREIFLGELLQQQADLLSHGQKQWLEIGMLLMQNPDLLMLDEPV 181 Query: 186 AGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMDKVQS 245 AGMSV+ER +TA+LL RISQGRSV+VIEHDM+FVKSIAHKVTVLHQGK+LAEGSM+ VQ+ Sbjct: 182 AGMSVNERVQTAELLKRISQGRSVLVIEHDMEFVKSIAHKVTVLHQGKVLAEGSMESVQN 241 Query: 246 DPKVIDVYLGH 256 +PKVI+VYLGH Sbjct: 242 NPKVIEVYLGH 252 >Q87XV0.1 Q87XV0_PSESM Branched-chain amino acid ABC transporter, ATP-binding protein Length = 253 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/243 (81%), Positives = 216/243 (88%), Gaps = 1/243 (0%) Query: 14 PVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLICGKTQATSGSI 73 PVLAIE LTVSFDGFKAVD LNLY+ RNEVRVVIGPNGA GKTTVLDLICGKT+ATSGSI Sbjct: 12 PVLAIEGLTVSFDGFKAVDDLNLYIDRNEVRVVIGPNGA-GKTTVLDLICGKTRATSGSI 70 Query: 74 RFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALTFKRTAD 133 F ELT+M E+ IVR GVGRKFQTPSIY+NLSVFENLEMSFP+GR VFGAL F+RT + Sbjct: 71 EFKGRELTRMKEYDIVRAGVGRKFQTPSIYDNLSVFENLEMSFPKGRTVFGALFFQRTDE 130 Query: 134 VVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMSVSER 193 VV RV VAAEIFL L QA LLSHGQKQWLEIGMLLMQ+PELLMLDEPVAGMSVSER Sbjct: 131 VVGRVNQVAAEIFLGDLLRQQAGLLSHGQKQWLEIGMLLMQDPELLMLDEPVAGMSVSER 190 Query: 194 EKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMDKVQSDPKVIDVY 253 +TA+LL RISQGRSV+VIEHDM+FVKSIAHKVTVLHQGK+LAEGSM+ VQ +PKVI+VY Sbjct: 191 AQTAELLKRISQGRSVLVIEHDMEFVKSIAHKVTVLHQGKVLAEGSMESVQKNPKVIEVY 250 Query: 254 LGH 256 LGH Sbjct: 251 LGH 253