BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0200.p         (117 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IXN0.1 D8IXN0_HERSS Sensor histidine kinase/response regulator...   144   5e-33
F1W189.1 F1W189_9BURK Sensor histidine kinase/response regulator      110   5e-23
A8HRX0.1 A8HRX0_AZOC5 Multi-sensor hybrid histidine kinase             75   3e-12
F2KJ16.1 F2KJ16_PSEBR Putative Histidine kinase, Hybrid                73   1e-11
Q2J0P9.1 Q2J0P9_RHOP2 Multi-sensor hybrid histidine kinase EC=2....    73   2e-11

>D8IXN0.1 D8IXN0_HERSS Sensor histidine kinase/response regulator protein
          Length = 1145

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/117 (64%), Positives = 93/117 (79%), Gaps = 4/117 (3%)

Query: 1    VVKPVSYTELLSKIRQQLRIDWVSAALPPPLSSAPVKETVVAQPMMLMPSQEKLQALLEL 60
            VVKPVSY ELL KIRQ L++DWV+AA     +  P       Q +ML+P+QEKL  LLEL
Sbjct: 1032 VVKPVSYHELLGKIRQHLQLDWVAAAD----APTPAAPPPAPQALMLVPTQEKLATLLEL 1087

Query: 61   GSIGYAKGILKKIDEMEQQSSAYLPFTTELRQLVKQFRLNEYVTRIKEMIRHDVNNV 117
            GSIGYAK I++++D +E+Q  AYLPFTTELRQLV+QFRLNEYVTRIKE+IRHD+N+V
Sbjct: 1088 GSIGYAKEIVRQLDALERQDPAYLPFTTELRQLVRQFRLNEYVTRIKELIRHDLNDV 1144


>F1W189.1 F1W189_9BURK Sensor histidine kinase/response regulator
          Length = 500

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/115 (49%), Positives = 80/115 (69%), Gaps = 11/115 (9%)

Query: 1   VVKPVSYTELLSKIRQQLRIDWVSAALPPPLSSAPVKETVVAQPMMLMPSQEKLQALLEL 60
           +VKPVS  ELL+KI+  L++DW++A LP  ++S P            +PS + L ALLEL
Sbjct: 394 IVKPVSLLELLAKIKLHLKLDWIAAPLPVVMASGPAT----------LPSIDDLTALLEL 443

Query: 61  GSIGYAKGILKKIDEMEQQSSAYLPFTTELRQLVKQFRLNEYVTRIKEMIRHDVN 115
           G+IGY KGIL K+ E+EQ + + L FTTELR+LV++FRLN++  R+KE I HD +
Sbjct: 444 GAIGYVKGILAKLTEIEQHTPSQLAFTTELRELVRRFRLNDFANRLKEAI-HDAH 497


>A8HRX0.1 A8HRX0_AZOC5 Multi-sensor hybrid histidine kinase
          Length = 1121

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 2    VKPVSYTELLSKIRQQLRIDWVSAALPPPLSSAPVKETVVAQPMMLMPSQEKLQALLELG 61
            VKPV    LL KIR QL +DWV        S  P +   +A P+ + PS   ++ LL+LG
Sbjct: 1016 VKPVDLRMLLEKIRAQLGLDWVYQ------SDTPDQPAAIAPPV-VPPSAGHIEELLKLG 1068

Query: 62   SIGYAKGILKKIDEMEQQSSAYLPFTTELRQLVKQFRLNEYVTRIKEMIRHD 113
             IGY +GI  K+  +  +S  + PF  E+  +V+ F LN Y++ ++ +  HD
Sbjct: 1069 RIGYVRGIQAKLQSLAAESPEHEPFVKEMSDIVRTFDLNRYMSVLEALRTHD 1120


>F2KJ16.1 F2KJ16_PSEBR Putative Histidine kinase, Hybrid
          Length = 1131

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 9/108 (8%)

Query: 1    VVKPVSYTELLSKIRQQLRIDWVSAALPPPLSSAPVKETVVAQPMMLMPSQEKLQALLEL 60
            + KPV   ELL +I++QL + W+    P P +          +P +L PSQ  L AL EL
Sbjct: 1023 LAKPVHTPELLERIQKQLDLHWLRREKPAPAT--------FPEPGIL-PSQPDLIALGEL 1073

Query: 61   GSIGYAKGILKKIDEMEQQSSAYLPFTTELRQLVKQFRLNEYVTRIKE 108
             +IGY +G+ +K+D ++ ++ A  PF + LR+L+K FRL+E    +KE
Sbjct: 1074 SAIGYVRGLHEKLDAIQAETPATAPFISSLRKLLKNFRLDEINRALKE 1121


>Q2J0P9.1 Q2J0P9_RHOP2 Multi-sensor hybrid histidine kinase EC=2.7.3.-
          Length = 1122

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 1    VVKPVSYTELLSKIRQQLRIDWVSAALPPPLSSAPVKETVVAQPMMLMPSQEKLQALLEL 60
            ++KPV    LL +I Q L+I+W+     P        ET  A   M  P  + ++ L+EL
Sbjct: 1017 LMKPVDIPRLLEQIGQLLKIEWIYKGETP--------ETPAATGDMQSPPMQHVEELIEL 1068

Query: 61   GSIGYAKGILKKIDEMEQQSSAYLPFTTELRQLVKQFRLNEYVTRIKEMIRHD 113
            G IGY +GI  K+D+++        F +++R LV+QF L++Y+  +  + RHD
Sbjct: 1069 GKIGYIRGIESKLDQIDNDYPESGTFVSQMRALVEQFDLDQYMKTLNTLYRHD 1121