BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0141.p (338 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IYV4.1 D8IYV4_HERSS TRAP-type C4-dicarboxylate-binding peripla... 555 e-156 D8J025.1 D8J025_HERSS TRAP-type C4-dicarboxylate transport syste... 529 e-148 F1VYR3.1 F1VYR3_9BURK TRAP-type C4-dicarboxylate transport syste... 511 e-143 D3NT54.1 D3NT54_AZOS1 C4-dicarboxylate-binding periplasmic protein 487 e-135 Q2W8X6.1 Q2W8X6_MAGSA TRAP-type C4-dicarboxylate transport system 479 e-133 >D8IYV4.1 D8IYV4_HERSS TRAP-type C4-dicarboxylate-binding periplasmic protein Length = 344 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/337 (78%), Positives = 296/337 (87%), Gaps = 3/337 (0%) Query: 5 LFAAATTAALLAFALQTTPALAQQT---IVIKFSHVVANNTPKGKGAERFKQLAEERTKG 61 L A A + L ALAQQ I+IKFSHVVAN+TPKGKGAERFK+LAE+ T+G Sbjct: 6 LRTALAACAFVTLGLPQPAALAQQPQQPIIIKFSHVVANDTPKGKGAERFKELAEKATQG 65 Query: 62 RVKVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEYEVFDLPYIFPNRAVL 121 RVKVEVYPNS LYKDKEELEALQLG+VQMLAPSLAKFGPLG +E+EVFDLPYIFP++AVL Sbjct: 66 RVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGAREFEVFDLPYIFPDKAVL 125 Query: 122 ARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLHKVDDFRGMKMRIQSSKVLD 181 R+TEGPIGQ LF+KLE KGIKGLAYWDNGMKVMTAN+PLHKV DFR +KMRIQSSKVLD Sbjct: 126 KRVTEGPIGQGLFQKLEGKGIKGLAYWDNGMKVMTANRPLHKVADFRALKMRIQSSKVLD 185 Query: 182 EQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQKVHEVQSQLTVSDHGYIGYA 241 EQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSN+Y+QK+HEVQS LTVSDHGYIGYA Sbjct: 186 EQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKMHEVQSNLTVSDHGYIGYA 245 Query: 242 VIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDALAAIKASGKTKVYYLTDAE 301 VIVNKKFWE+LP D+R QLE+AMK AT YAN IAQ+EN+DALAAIKASGKT+VY L++ E Sbjct: 246 VIVNKKFWEALPADIRSQLEAAMKQATLYANTIAQKENDDALAAIKASGKTRVYTLSEQE 305 Query: 302 KAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 338 KAEWR+ALLPVHKSM +RVG DLI+ IYKE+ G K Sbjct: 306 KAEWRRALLPVHKSMAARVGADLIEAIYKESEAAGVK 342 >D8J025.1 D8J025_HERSS TRAP-type C4-dicarboxylate transport system, periplasmic component protein Length = 334 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/326 (77%), Positives = 286/326 (87%) Query: 13 ALLAFALQTTPALAQQTIVIKFSHVVANNTPKGKGAERFKQLAEERTKGRVKVEVYPNSQ 72 A+ A A+ +T A AQQ IVIKFSHVVAN+TPKGK AERFK+LAE+ TKGRVK+EVYPNS Sbjct: 9 AMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATKGRVKIEVYPNST 68 Query: 73 LYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEYEVFDLPYIFPNRAVLARITEGPIGQN 132 LYKDKEELEALQLGAVQMLAPSLAKFGPLGVKE+EVFDLPYIFP + VL R+TEGPIG++ Sbjct: 69 LYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGKD 128 Query: 133 LFRKLEAKGIKGLAYWDNGMKVMTANKPLHKVDDFRGMKMRIQSSKVLDEQFRALKANPQ 192 LF+KLE KGI GLAYWDNG KVM+ANKPLH DFRG+KMRIQSSKVLD Q RAL ANPQ Sbjct: 129 LFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANPQ 188 Query: 193 VLAFSEVYQAMQTGVVDGSENTPSNIYSQKVHEVQSQLTVSDHGYIGYAVIVNKKFWESL 252 VLAFSEVYQA+QTGVVDG+EN PSN+Y+QK+HEVQ +TVS+HGY+GYAVIVNKKFW+ L Sbjct: 189 VLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGL 248 Query: 253 PPDVRGQLESAMKDATRYANAIAQQENEDALAAIKASGKTKVYYLTDAEKAEWRKALLPV 312 P D+R QLE AMKDAT+YANAIAQQEN+ ALAA++ +GKT VY LTDAEKAEWRKALLPV Sbjct: 249 PSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPV 308 Query: 313 HKSMESRVGKDLIQEIYKETANLGAK 338 + M SR+GKDLI + KE+A LG K Sbjct: 309 QQQMASRIGKDLIDAVNKESAALGQK 334 >F1VYR3.1 F1VYR3_9BURK TRAP-type C4-dicarboxylate transport system, periplasmic component Length = 337 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/338 (72%), Positives = 286/338 (84%), Gaps = 1/338 (0%) Query: 1 MTKKLFAAATTAALLAFALQTTPALAQQTIVIKFSHVVANNTPKGKGAERFKQLAEERTK 60 M ++ F +T A + A L + A+AQ IVIKFSHVVAN+TPKGK AERFK+L E+ K Sbjct: 1 MQRRTFTLSTLA-MSAALLMSGNAMAQTPIVIKFSHVVANDTPKGKAAERFKELVEKNLK 59 Query: 61 GRVKVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEYEVFDLPYIFPNRAV 120 GRVKVE+YPNS LYKDKEELEALQLGAVQMLAPSLAKFGPLGVKE+E+FDLPYIFP + V Sbjct: 60 GRVKVELYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFELFDLPYIFPGKDV 119 Query: 121 LARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLHKVDDFRGMKMRIQSSKVL 180 L R+TEGPIG++LF+KLE+KGI GLAYWDNG KVM+ANKPL DF+G+KMRIQSSKVL Sbjct: 120 LYRVTEGPIGKDLFKKLESKGITGLAYWDNGFKVMSANKPLKTPADFKGLKMRIQSSKVL 179 Query: 181 DEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQKVHEVQSQLTVSDHGYIGY 240 D + RAL ANPQVLAFSEVYQA+QTGVVDG+EN PSN+Y+QK+HEVQS +TVS+HGY+GY Sbjct: 180 DAEMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQSNVTVSNHGYLGY 239 Query: 241 AVIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDALAAIKASGKTKVYYLTDA 300 AVIVNKKFW+ LP D+R LE+AMKDAT+YANAIAQQEN+ A+ A++ SGKT+VY L D Sbjct: 240 AVIVNKKFWDGLPADIRTGLEAAMKDATKYANAIAQQENDKAMEAVRKSGKTEVYVLNDK 299 Query: 301 EKAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 338 EKAEWRKALLPV K MESR+GKDLI + KE LG K Sbjct: 300 EKAEWRKALLPVQKDMESRIGKDLITAVGKEATTLGYK 337 >D3NT54.1 D3NT54_AZOS1 C4-dicarboxylate-binding periplasmic protein Length = 340 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/335 (70%), Positives = 276/335 (82%) Query: 4 KLFAAATTAALLAFALQTTPALAQQTIVIKFSHVVANNTPKGKGAERFKQLAEERTKGRV 63 KL AA +++ + + A AQ IVIKFSHVVA TPKGKGAE+FK+LAE T G+V Sbjct: 5 KLLCAAAVGCVMSAPMALSTAWAQDQIVIKFSHVVAPETPKGKGAEKFKELAERLTAGKV 64 Query: 64 KVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEYEVFDLPYIFPNRAVLAR 123 KVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLG KE+EVFDLPYIFP++ VL R Sbjct: 65 KVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGAKEFEVFDLPYIFPSKEVLQR 124 Query: 124 ITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLHKVDDFRGMKMRIQSSKVLDEQ 183 +T+G IG++LFRKLE+KGI GLAYWDNG K+M+ANKPL K +D +G+KMRIQSSKVLD Q Sbjct: 125 VTKGEIGKSLFRKLESKGIVGLAYWDNGFKIMSANKPLIKPEDVKGLKMRIQSSKVLDAQ 184 Query: 184 FRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQKVHEVQSQLTVSDHGYIGYAVI 243 RAL A PQV+AFSEVYQA+QTGVVDG+EN PSN+Y+QK+HEVQ T++DHGY+GYAVI Sbjct: 185 MRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKNATLTDHGYLGYAVI 244 Query: 244 VNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDALAAIKASGKTKVYYLTDAEKA 303 VNKKFWE LP DVRG+LE AMK+AT YAN IAQ EN+ ALA +KASGKT+ + T E+ Sbjct: 245 VNKKFWEGLPADVRGKLEEAMKEATDYANDIAQNENDVALAQMKASGKTEFHSQTKEERE 304 Query: 304 EWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 338 W KAL PVHK E+RVGKDLI+ IYKE+A G K Sbjct: 305 AWIKALKPVHKDAEARVGKDLIEAIYKESAAAGFK 339 >Q2W8X6.1 Q2W8X6_MAGSA TRAP-type C4-dicarboxylate transport system Length = 337 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 234/336 (69%), Positives = 274/336 (81%), Gaps = 7/336 (2%) Query: 5 LFAAATTAALLAFALQTTPALAQQT--IVIKFSHVVANNTPKGKGAERFKQLAEERTKGR 62 L A A A +LA + A+AQQ IVIKFSHVVA +TPKGKGAE FK+LAEERTKGR Sbjct: 6 LIAGAIAACVLAGS-----AMAQQAQPIVIKFSHVVAPDTPKGKGAEYFKKLAEERTKGR 60 Query: 63 VKVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEYEVFDLPYIFPNRAVLA 122 VKVEVYPNSQLYKDKEE+EALQLGAVQMLAPSLAKFGPLGVKE+EVFDLPYIFP++ VL Sbjct: 61 VKVEVYPNSQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLR 120 Query: 123 RITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLHKVDDFRGMKMRIQSSKVLDE 182 +T GP+G +L +KLE KGI GLAYWDNG K+M+ANKP+ D +G+KMRIQSSKVLD Sbjct: 121 SVTGGPVGASLLKKLEGKGIIGLAYWDNGFKIMSANKPIKAPSDLKGVKMRIQSSKVLDA 180 Query: 183 QFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQKVHEVQSQLTVSDHGYIGYAV 242 + RAL A PQV+AFSEVYQA+QTGVVDG+EN PSN+Y+QK+HEVQ T+++HGY+GYAV Sbjct: 181 EMRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKHATMTNHGYLGYAV 240 Query: 243 IVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDALAAIKASGKTKVYYLTDAEK 302 IVNKKFWE LP D+R LE AM +A+ +ANAIAQ EN+DA+ A+KASGKT+ + + AE Sbjct: 241 IVNKKFWEGLPADIRATLEGAMSEASVFANAIAQTENDDAVKAMKASGKTEFHDPSAAEI 300 Query: 303 AEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 338 WRKALLPVHK ME RVGKDLI+ YKE A G K Sbjct: 301 EAWRKALLPVHKDMEGRVGKDLIESFYKEAAKFGFK 336