BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0132.p (320 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D4XJL0.1 D4XJL0_9BURK ABC superfamily ATP binding cassette trans... 317 2e-84 A3W121.1 A3W121_9RHOB ABC-type transport system permease protein... 270 2e-70 D7A6L1.1 D7A6L1_STAND Inner-membrane translocator 256 2e-66 A7IF09.1 A7IF09_XANP2 Inner-membrane translocator 244 1e-62 D5RMV3.1 D5RMV3_9PROT ABC superfamily ATP binding cassette trans... 207 2e-51 >D4XJL0.1 D4XJL0_9BURK ABC superfamily ATP binding cassette transporter, membrane protein Length = 338 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 173/284 (60%), Positives = 216/284 (76%) Query: 34 PWLKTPMVVATSFGIAALGVSILIRSGQLSFGHAMFSCAAGYAVAFAARAMPELDSAVLI 93 W TP+V+ ++ IAALGVS++ R+GQ+SFGHAM+SC + Y VAF ARAMP D+ VLI Sbjct: 22 SWTITPIVIGLTYAIAALGVSVMARAGQISFGHAMYSCISAYTVAFLARAMPGTDALVLI 81 Query: 94 LLGTVFGAVMGMVIGLFVVRYRAIFFGMLNLALSMVLFSILGKFYSLTGGTDGIRLARPT 153 L G + +VIGLFVVRYR IFFGMLNLALSMVLF++LGK Y+LTGG+DG+R+ RP Sbjct: 82 LAGVAASFLAAIVIGLFVVRYRGIFFGMLNLALSMVLFALLGKLYTLTGGSDGMRIVRPA 141 Query: 154 FFGVRMERDGFETTLLVVAVVLAVALAWGVQRYMMSIAGQALTAVKTNETRLEYVGLSAN 213 GV MER+ FE LLV+ +VL++ LAW VQRY S +GQAL+A+KTNETR+EY+G SA Sbjct: 142 MAGVLMERESFERALLVLTLVLSMVLAWWVQRYFRSGSGQALSAIKTNETRIEYLGFSAY 201 Query: 214 RALWIGYVISAALCGLSGAMFALMQGLVTPEMGYWVRSGEIVFISILGGVGHPVGAFLGA 273 +W GY++SA + G SGA+ ALMQGLVTPE+G W+RSGE VFI+ILGG GH GAFLGA Sbjct: 202 FIMWKGYLLSAVVVGFSGAILALMQGLVTPEIGSWLRSGEFVFITILGGAGHAAGAFLGA 261 Query: 274 VVFEFVKLYSAALFTGAWQMVLGFVLIGLVFFVPTGLSGLLFRK 317 V FE VKL SAA F G WQ +LG LI ++F PTG G + ++ Sbjct: 262 VGFETVKLVSAAYFPGLWQFLLGLTLILVIFMFPTGFVGQIMKR 305 >A3W121.1 A3W121_9RHOB ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 5 Length = 311 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/295 (48%), Positives = 198/295 (67%), Gaps = 3/295 (1%) Query: 27 LGLPMIWPWLKTPMVVATSFGIAALGVSILIRSGQLSFGHAMFSCAAGYAVAFAARAMPE 86 + +P + P ++ + A + G+A LGV++L+R+GQ+SFGHA++ A YA AF +MP Sbjct: 5 IAVPFLVPSMQLLVNFALAKGLAVLGVTVLLRAGQVSFGHALYFGIAAYAGAFLMTSMPA 64 Query: 87 LDSAVLILLGTVFGAVMGMVIGLFVVRYRAIFFGMLNLALSMVLFSILGKFYSLTGGTDG 146 D V++++G + V G+ +GLFVVRYR IFFGMLNLA SM+ +SIL KFY LTGG DG Sbjct: 65 TDFFVILIVGVLGAIVAGLFVGLFVVRYRGIFFGMLNLAFSMIFWSILEKFYHLTGGADG 124 Query: 147 IRLARPTFFGVRMERDGFETTLLVVAVVLAVALAWGVQRYMMSIAGQALTAVKTNETRLE 206 +R RPT FG ++ F L +VL VAL W R+ S GQ +KTNETRLE Sbjct: 125 LRFTRPTVFGQALDHVQFNMVLYYSVLVLMVALGWFTHRWFASPVGQLFQTIKTNETRLE 184 Query: 207 YVGLSANRALWIGYVISAALCGLSGAMFALMQGLVTPEMGYWVRSGEIVFISILGGVGHP 266 Y+G+S RAL GY++SAALCG+ G M + QG+VTPE +WVRS E+VFI++LGG G Sbjct: 185 YLGISPKRALLSGYLLSAALCGVGGVMMGMAQGVVTPEYVWWVRSAEMVFIAVLGGAGSV 244 Query: 267 VGAFLGAVVFEFVKLYSAALFTGAWQMVLGFVLIGLVFFVPTGLSGLL---FRKE 318 GAFLGA+++E V+ Y++ WQM+LG L+ ++ F P GL G+L F+++ Sbjct: 245 QGAFLGALIYEVVRTYASVYAGDIWQMILGGFLLIIILFAPGGLIGILESAFKRD 299 >D7A6L1.1 D7A6L1_STAND Inner-membrane translocator Length = 311 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 131/284 (46%), Positives = 185/284 (65%) Query: 35 WLKTPMVVATSFGIAALGVSILIRSGQLSFGHAMFSCAAGYAVAFAARAMPELDSAVLIL 94 W + +A + G++ L + +L+R+GQ+SFGH ++ Y VAF +A LD+ +LI Sbjct: 24 WTTVMLTIALAIGLSVLAIVVLLRAGQVSFGHGLYYATGAYTVAFLVKARLSLDALILIP 83 Query: 95 LGTVFGAVMGMVIGLFVVRYRAIFFGMLNLALSMVLFSILGKFYSLTGGTDGIRLARPTF 154 LG + ++ + G F VRYR IFF M+NLA+SMV FS+L K Y +TGG DG+ +ARPT Sbjct: 84 LGGLVAMLIAVAFGFFAVRYRDIFFAMINLAISMVAFSLLEKLYHITGGGDGMNVARPTL 143 Query: 155 FGVRMERDGFETTLLVVAVVLAVALAWGVQRYMMSIAGQALTAVKTNETRLEYVGLSANR 214 G R++R FE + + +A V RY+ S G+AL AVK+NE RLEY+G+S N Sbjct: 144 GGGRLDRAAFEAWMFYATLAIAALAGLLVTRYLASPLGRALEAVKSNEMRLEYLGVSGNH 203 Query: 215 ALWIGYVISAALCGLSGAMFALMQGLVTPEMGYWVRSGEIVFISILGGVGHPVGAFLGAV 274 L + Y ISAAL G+SGA+ A++ G V PE YWVRSGE VFI+ILGG G+ +GAF G++ Sbjct: 204 VLHVAYAISAALAGVSGAIIAIVNGHVAPEFAYWVRSGEFVFIAILGGAGNVLGAFAGSM 263 Query: 275 VFEFVKLYSAALFTGAWQMVLGFVLIGLVFFVPTGLSGLLFRKE 318 VFE ++ ++AAL WQ LG LI ++ F P GL+ L F++ Sbjct: 264 VFEAIRNHAAALAADYWQTTLGLSLIAIIMFAPDGLTQLRFKRN 307 >A7IF09.1 A7IF09_XANP2 Inner-membrane translocator Length = 324 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 134/252 (53%), Positives = 176/252 (69%) Query: 63 SFGHAMFSCAAGYAVAFAARAMPELDSAVLILLGTVFGAVMGMVIGLFVVRYRAIFFGML 122 SFGH MF Y VAF R++ D A+L+ V ++G+++GLFVVRYR IFFGML Sbjct: 52 SFGHGMFFATGAYTVAFLGRSVGGGDIALLLAASAVSSVLLGLLVGLFVVRYRYIFFGML 111 Query: 123 NLALSMVLFSILGKFYSLTGGTDGIRLARPTFFGVRMERDGFETTLLVVAVVLAVALAWG 182 NLA SMVL+SIL KF+ LTGG+DG+R+ RP+ FG +R F+T + + +VLA A+ Sbjct: 112 NLAFSMVLYSILEKFFHLTGGSDGLRIRRPSAFGFAFDRAQFDTLIYYLTLVLAFGAAYL 171 Query: 183 VQRYMMSIAGQALTAVKTNETRLEYVGLSANRALWIGYVISAALCGLSGAMFALMQGLVT 242 V RY+ S GQAL A+K+NETRLEY+GLSA + +GYVISA LCG+ GA ++QG+ T Sbjct: 172 VWRYLRSPLGQALKAIKSNETRLEYIGLSARFVMLVGYVISALLCGIGGACLGIIQGIAT 231 Query: 243 PEMGYWVRSGEIVFISILGGVGHPVGAFLGAVVFEFVKLYSAALFTGAWQMVLGFVLIGL 302 PE YW RS E VFI+ILGGVGH GA G V+E V+ Y+AA +WQM+LGFVL+ + Sbjct: 232 PEYSYWTRSAEFVFIAILGGVGHVAGALTGTFVYEAVRTYAAAFVADSWQMILGFVLLAI 291 Query: 303 VFFVPTGLSGLL 314 + PTG+ GL+ Sbjct: 292 ILKAPTGIVGLV 303 >D5RMV3.1 D5RMV3_9PROT ABC superfamily ATP binding cassette transporter permease protein Length = 313 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/280 (49%), Positives = 192/280 (68%), Gaps = 2/280 (0%) Query: 34 PWLKTPMVVATSFGIAALGVSILIRSGQLSFGHAMFSCAAGYAVAFAARAMPELDSAVLI 93 PWL+ + +A + G+A LG+ +L+R+GQ+SFGHA++ A YAVAF + +PE + VL+ Sbjct: 25 PWLRFVLTIALAKGLAVLGILLLLRAGQVSFGHALYLAFAAYAVAFLSTLVPE--ALVLL 82 Query: 94 LLGTVFGAVMGMVIGLFVVRYRAIFFGMLNLALSMVLFSILGKFYSLTGGTDGIRLARPT 153 + + A++G+V+GLFV RYR IFFGMLNLALSMV +S+L KFYSLT GTDGIRL Sbjct: 83 PIAAIGAALLGLVVGLFVSRYREIFFGMLNLALSMVFYSVLEKFYSLTHGTDGIRLPPLR 142 Query: 154 FFGVRMERDGFETTLLVVAVVLAVALAWGVQRYMMSIAGQALTAVKTNETRLEYVGLSAN 213 F G + + +LV+A+VL++ V+ Y+ S GQAL+ +KT E RLE++G+SA Sbjct: 143 FAGQSLTPEAQGWVVLVLALVLSLGFGALVRVYLASPMGQALSGIKTREARLEFMGVSAR 202 Query: 214 RALWIGYVISAALCGLSGAMFALMQGLVTPEMGYWVRSGEIVFISILGGVGHPVGAFLGA 273 R L YV++A + G GA+ A+ VTP + YW SGE+VFI+ILGG G G FLGA Sbjct: 203 RVLLSAYVLAALMAGCGGAVIAMTSRHVTPALAYWTASGELVFIAILGGAGSVFGPFLGA 262 Query: 274 VVFEFVKLYSAALFTGAWQMVLGFVLIGLVFFVPTGLSGL 313 V +E ++Y+AAL AWQM+LG VL+ ++ F P GL GL Sbjct: 263 VAYELTRVYAAALVADAWQMILGGVLLLVILFAPGGLWGL 302