BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0130.p         (85 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D7A6K9.1 D7A6K9_STAND Extracellular ligand-binding receptor            99   2e-19
D5RMV5.1 D5RMV5_9PROT ABC superfamily ATP binding cassette trans...    87   8e-16
A7IF07.1 A7IF07_XANP2 Extracellular ligand-binding receptor            87   1e-15
D4XJK4.1 D4XJK4_9BURK ABC superfamily ATP binding cassette trans...    77   1e-12
A3W123.1 A3W123_9RHOB ABC-type transport system periplasmic subs...    75   4e-12

>D7A6K9.1 D7A6K9_STAND Extracellular ligand-binding receptor
          Length = 432

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 54/80 (67%)

Query: 1   MHGLNFRGLTREVKIRADGQGLEDQLLGTTKKTAAYPFPVLDKIEIYPAEMAIAPVGQKS 60
             GL FRGLT EV IR D QGLEDQL+GTT +   Y F VLD++ IYPAE+   P+G KS
Sbjct: 349 FRGLKFRGLTSEVSIREDNQGLEDQLIGTTVRVPEYGFAVLDRMSIYPAELVTTPIGAKS 408

Query: 61  VDWVKTIKPELLRDPRIKTF 80
            DW+  I+ E   DP I+TF
Sbjct: 409 ADWLSQIRLETANDPSIETF 428


>D5RMV5.1 D5RMV5_9PROT ABC superfamily ATP binding cassette transporter,
           ligand-binding protein
          Length = 432

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query: 3   GLNFRGLTREVKIRADGQGLEDQLLGTTKKTAAYPFPVLDKIEIYPAEMAIAPVGQKSVD 62
           GL F  LT  ++IR DGQGLEDQL+GTT +T  YPFPV+  + ++PA     PVGQKS+D
Sbjct: 352 GLEFPSLTGSIRIREDGQGLEDQLIGTTVQTDKYPFPVMTDMVVFPAASVTTPVGQKSLD 411

Query: 63  WVKTIKPELL 72
           W+KT+ P +L
Sbjct: 412 WLKTLTPAVL 421


>A7IF07.1 A7IF07_XANP2 Extracellular ligand-binding receptor
          Length = 432

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 1   MHGLNFRGLTREVKIRADGQGLEDQLLGTTKKTAAYPFPVLDKIEIYPAEMAIAPVGQKS 60
           M GL F+ L R V+IRADGQG+EDQL+GTT +  AY F +LD + I+PA   + PVGQKS
Sbjct: 350 MPGLTFQALGRPVEIRADGQGVEDQLIGTTTRVPAYSFDILDNMMIFPAVQLMPPVGQKS 409

Query: 61  VDWVKTIKPELLRDPRIKTF 80
             W+ T+KP ++ D ++ TF
Sbjct: 410 EAWIATLKPGIV-DIKVDTF 428


>D4XJK4.1 D4XJK4_9BURK ABC superfamily ATP binding cassette transporter
           periplasmic substrate-binding protein
          Length = 434

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1   MHGLNFRGLTREVKI-RADGQGLEDQLLGTTKKTAAYPFPVLDKIEIYPAEMAIAPVGQK 59
           MH + F+G  R+VK+ RADGQGLE QL G TKK+  YPF VL  I I PAE+    V   
Sbjct: 351 MHDVTFKGYGRDVKMHRADGQGLEAQLFGVTKKSDKYPFKVLADITIVPAELVTPGVEDT 410

Query: 60  SVDWV-KTIKPELLRDPRIKTF 80
           S+ W+ K++ P++L+  +IK +
Sbjct: 411 SMGWIEKSLTPDVLKSDQIKVY 432


>A3W123.1 A3W123_9RHOB ABC-type transport system periplasmic
           substrate-binding protein (Probable substrates
           branched-chain/neutral amino acids)
          Length = 433

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 1   MHGLNFRGLTREVKIRADGQGLEDQLLGTTKKTAAYPFPVLDKIEIYPAEMAIAPVGQKS 60
           + GL F+GL R V +R D QG+EDQL+GT+ +T  YPF  +  I I+  +    PVGQ S
Sbjct: 352 LEGLTFQGLGRPVTLREDHQGVEDQLMGTSVQTGEYPFATMQNIMIFDGDELTTPVGQNS 411

Query: 61  VDWVKTIKPELLRDPRIKTF 80
           ++WV  +    +    + TF
Sbjct: 412 IEWVGALDAGFVESVTVDTF 431