BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0129.p         (392 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D4XJK4.1 D4XJK4_9BURK ABC superfamily ATP binding cassette trans...   255   8e-66
A7IF07.1 A7IF07_XANP2 Extracellular ligand-binding receptor           240   2e-61
A3W123.1 A3W123_9RHOB ABC-type transport system periplasmic subs...   235   8e-60
D5RMV5.1 D5RMV5_9PROT ABC superfamily ATP binding cassette trans...   204   1e-50
D7A6K9.1 D7A6K9_STAND Extracellular ligand-binding receptor           204   2e-50

>D4XJK4.1 D4XJK4_9BURK ABC superfamily ATP binding cassette transporter
           periplasmic substrate-binding protein
          Length = 434

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 143/164 (87%), Gaps = 1/164 (0%)

Query: 144 MRDIARRVGINGVKVVPTFVDEGVGGDKLLSEYRRVVQEQGVKVMLGSISSGSCNIVAPV 203
           ++DI    GI+GVK+VP+++DEG GG+KLLSEYRR+  E G +VML +ISSG CNIVAPV
Sbjct: 58  IQDINAAGGIDGVKLVPSYIDEGGGGEKLLSEYRRLA-EGGTRVMLSAISSGHCNIVAPV 116

Query: 204 AEDLKVLNILWDCGTEKVLEERRYRYVVRTQANATTEMVASVLYLLRQKPNFKTIAVVNQ 263
           AEDLKVLN+LWDCGTEK LE ++Y+YVVRTQANATTEMVA VLYL++ KP+FKTIA+VNQ
Sbjct: 117 AEDLKVLNVLWDCGTEKALEGKKYKYVVRTQANATTEMVAQVLYLMKVKPDFKTIAIVNQ 176

Query: 264 DYAWGRDSWELFSHTLKMLKPDVKVVAELFPKFGASDFSTEISR 307
           DYAWGRDS ++F   LK  KPDVKVVAE+FPKFGA+DFSTEISR
Sbjct: 177 DYAWGRDSRDIFLAALKKFKPDVKVVAEMFPKFGAADFSTEISR 220


>A7IF07.1 A7IF07_XANP2 Extracellular ligand-binding receptor
          Length = 432

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 137/175 (78%)

Query: 146 DIARRVGINGVKVVPTFVDEGVGGDKLLSEYRRVVQEQGVKVMLGSISSGSCNIVAPVAE 205
           DI  + G+ GV V   FVDEG G + L++EYRR+V++  V VM  SISSG CN +AP+AE
Sbjct: 58  DINAKGGVQGVPVKLFFVDEGAGIETLMTEYRRLVEDTKVDVMFASISSGVCNKIAPLAE 117

Query: 206 DLKVLNILWDCGTEKVLEERRYRYVVRTQANATTEMVASVLYLLRQKPNFKTIAVVNQDY 265
           DLKVLN +WDCGT+++LEE +Y YV RTQANAT E++A +LYLL+ KP+FKTIAVVNQDY
Sbjct: 118 DLKVLNFMWDCGTQRILEEDKYNYVFRTQANATPEVLAPLLYLLKTKPDFKTIAVVNQDY 177

Query: 266 AWGRDSWELFSHTLKMLKPDVKVVAELFPKFGASDFSTEISRXARRARRSLLSAS 320
           AWGRDSW +FS  LK+LKPDVKVVAE FPKFGA+DFSTE+SR        +LS S
Sbjct: 178 AWGRDSWAIFSQALKVLKPDVKVVAEFFPKFGAADFSTEVSRLLALKPDVILSTS 232


>A3W123.1 A3W123_9RHOB ABC-type transport system periplasmic
           substrate-binding protein (Probable substrates
           branched-chain/neutral amino acids)
          Length = 433

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 137/177 (77%)

Query: 144 MRDIARRVGINGVKVVPTFVDEGVGGDKLLSEYRRVVQEQGVKVMLGSISSGSCNIVAPV 203
           + +I    GINGV V  +F+DEG G + L SEYRR+V+  G +VML +ISSG+C  +AP+
Sbjct: 58  IENINAAGGINGVPVDISFIDEGAGAEALTSEYRRMVESGGAEVMLAAISSGNCQTLAPL 117

Query: 204 AEDLKVLNILWDCGTEKVLEERRYRYVVRTQANATTEMVASVLYLLRQKPNFKTIAVVNQ 263
           AEDL+V N++WDCGT+++ EE  Y+YV RTQANAT EM+A+VLYLL+ KP+FKTIAVVNQ
Sbjct: 118 AEDLQVPNLMWDCGTQRIFEENDYKYVFRTQANATPEMLATVLYLLKTKPDFKTIAVVNQ 177

Query: 264 DYAWGRDSWELFSHTLKMLKPDVKVVAELFPKFGASDFSTEISRXARRARRSLLSAS 320
           DYAWGRDSW++F   LK +KPDV+VVAE FPKFG+ DFSTEISR        +LS S
Sbjct: 178 DYAWGRDSWDIFITALKAMKPDVEVVAEFFPKFGSPDFSTEISRLQAMQPDVILSTS 234


>D5RMV5.1 D5RMV5_9PROT ABC superfamily ATP binding cassette transporter,
           ligand-binding protein
          Length = 432

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 120/156 (76%)

Query: 152 GINGVKVVPTFVDEGVGGDKLLSEYRRVVQEQGVKVMLGSISSGSCNIVAPVAEDLKVLN 211
           GI GV++ P FVDEG G D  + EYRR+VQ + V ++   ISS  C   AP+A++L+   
Sbjct: 64  GIGGVRIRPVFVDEGPGVDHFVGEYRRLVQSENVAIIFAGISSADCLACAPLADELRRPT 123

Query: 212 ILWDCGTEKVLEERRYRYVVRTQANATTEMVASVLYLLRQKPNFKTIAVVNQDYAWGRDS 271
           +LWDCGT+++ E+ RY Y  RTQANAT E++AS+LYLL+ KP+F+++AVVNQDYAWGRDS
Sbjct: 124 LLWDCGTQRIFEDGRYDYAYRTQANATPEVLASLLYLLKTKPDFRSLAVVNQDYAWGRDS 183

Query: 272 WELFSHTLKMLKPDVKVVAELFPKFGASDFSTEISR 307
           W++F   L  LKP V++ AELFP+FGA+DFSTE++R
Sbjct: 184 WDIFRTALNTLKPGVRIAAELFPRFGATDFSTEVTR 219


>D7A6K9.1 D7A6K9_STAND Extracellular ligand-binding receptor
          Length = 432

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 124/162 (76%)

Query: 146 DIARRVGINGVKVVPTFVDEGVGGDKLLSEYRRVVQEQGVKVMLGSISSGSCNIVAPVAE 205
           D+  + GI GV + P F+DEG G ++L+SEYRRVV  +  +VML S+SS SC  + PVAE
Sbjct: 57  DLNAKGGILGVPLRPIFIDEGAGINQLMSEYRRVVLNEKAEVMLASVSSASCLALTPVAE 116

Query: 206 DLKVLNILWDCGTEKVLEERRYRYVVRTQANATTEMVASVLYLLRQKPNFKTIAVVNQDY 265
           DL+V NILWDC + ++LE+  Y+Y VRTQ+++  EM+A+ LYL++ K +FKT+A VNQDY
Sbjct: 117 DLEVPNILWDCSSPRILEDNNYKYSVRTQSHSGAEMLAAALYLVKNKADFKTVAGVNQDY 176

Query: 266 AWGRDSWELFSHTLKMLKPDVKVVAELFPKFGASDFSTEISR 307
           A GRD W LF   LK LKPDV++VAELFPKFGA D+STEISR
Sbjct: 177 AAGRDQWGLFRIALKALKPDVEIVAELFPKFGAPDYSTEISR 218