BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0082.p (291 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q39MF6.1 Q39MF6_BURS3 Transcriptional regulator, IclR family 198 7e-49 F0GAL6.1 F0GAL6_9BURK IclR family transcriptional regulator 190 2e-46 Q5P6A9.1 Q5P6A9_AROAE Transcriptional regulator 179 3e-43 Q7WPR8.1 Q7WPR8_BORBR IclR family regulatory protein 176 3e-42 Q7WBS5.1 Q7WBS5_BORPA IclR family regulatory protein 176 3e-42 >Q39MF6.1 Q39MF6_BURS3 Transcriptional regulator, IclR family Length = 289 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 163/281 (58%), Gaps = 6/281 (2%) Query: 6 RLQGTGNGQWADVKVVLRAPGNGSPRDVPINANDIIAPIERGLAILSVFGPADQWLGNQE 65 R+ + W D + G+G +D + ++ P+ R LAIL+ F P WLGNQE Sbjct: 11 RMSAQEDANWHDASI-----GDGESQDGGHASRAMVVPLARSLAILAAFSPHAPWLGNQE 65 Query: 66 ISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSH 125 + ++TGIP TV+R+ ++L G+L++S + RKY LAA VL LGY + +S+ LAR Sbjct: 66 LVSETGIPAPTVSRMVRSLVALGYLHYSPQRRKYRLAAPVLSLGYAAIAHSNVQLLARLE 125 Query: 126 MQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSLATLGVNVGARFPIAANPFGLALLSGL 185 MQ A+ +V L RD LDV +LE C + L ++ G R IA++P G ALL+ L Sbjct: 126 MQAFANANETYVMLGTRDRLDVIVLETCAGKPASVDLKLHAGTRLRIASSPMGWALLAAL 185 Query: 186 PLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQVSQKGYCVSICELGSEITVAAAPLNI 245 P ER YLL +I + +++ NLR R+++ ++QV GYC+S+ E ++T+ A PL + Sbjct: 186 PELERFYLLGNIERKTGRDW-PNLRRRISEGISQVHNVGYCMSLGEWEPDLTILAVPLVV 244 Query: 246 PDRPPMAIGCAGPARLITREKLREEIGPRLVELVTRLQDHA 286 D P+ + C G + + R ++ E+GPRLV LQ+ A Sbjct: 245 QDHTPLVLACIGRSARLGRARVERELGPRLVAAAQHLQEQA 285 >F0GAL6.1 F0GAL6_9BURK IclR family transcriptional regulator Length = 250 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 151/250 (60%), Gaps = 1/250 (0%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 ++ P+ R LAIL+ F P + WLGNQE+ +TGIP TV+R+ ++L G+L++S + RKY Sbjct: 1 MVVPLARSLAILAAFSPHEPWLGNQELVIETGIPAPTVSRMARSLVALGYLHYSPQRRKY 60 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 LAA VL LGY + +S+ LAR MQ A+ +V L RD LDV +LE C + Sbjct: 61 RLAAPVLSLGYAAIAHSNVQLLARLEMQAFANANETYVMLGTRDRLDVIVLETCAGKPAS 120 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQ 219 L + G R IA++P G ALL+ LP ER YLL +I + +++ LR R+++ ++Q Sbjct: 121 VDLKLYAGTRLRIASSPMGWALLAALPELERFYLLGNIERKTGRDWP-TLRRRISEGISQ 179 Query: 220 VSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREEIGPRLVELV 279 V GYC+S+ E ++T+ A PL + D P+ + C G + + R ++ E+GPRLV Sbjct: 180 VHNVGYCMSLGEWEPDLTILAVPLVVQDHTPLVLACVGRSARLGRARVERELGPRLVAAA 239 Query: 280 TRLQDHAGLT 289 LQ+ A +T Sbjct: 240 QHLQEQAVVT 249 >Q5P6A9.1 Q5P6A9_AROAE Transcriptional regulator Length = 285 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 157/264 (59%), Gaps = 10/264 (3%) Query: 32 DVPINAND-------IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTL 84 D+ + A+D + + RGL +L F P D L N E++ +TG+PK T++RLT TL Sbjct: 22 DIQVFADDEESKDRQFVNALARGLELLRCFRPGDTELSNAELARRTGLPKPTISRLTHTL 81 Query: 85 TDQGFLNHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDG 144 T G+L S Y LAA VL LGY + N +AR +M++L++ V VS+ RD Sbjct: 82 TKLGYLGFSESRGTYRLAAGVLALGYALLSNLDVRKVARPYMEELSEYAQVSVSIGARDR 141 Query: 145 LDVSLLENCHSTSSLATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQE 204 L + +E+C S++++ TL ++VG+R P+A + G ALL GLP ER+YL+DHIRLR ++ Sbjct: 142 LSIVYIESCRSSANV-TLRLDVGSRIPLATSAVGRALLCGLPQGERDYLMDHIRLRDEEN 200 Query: 205 YRVNLRSRVADAVAQVSQKGYCVSICELGSEITVAAAPLN-IPDRPPMAIGCAGPARLIT 263 + +++ + A+ ++G+ VS + ++ P+ + MA C GPA L++ Sbjct: 201 W-PRVKAGIEQALRDYHERGFVVSAGDWQKDVHAVGVPMTGVDGERAMAFNCGGPAFLLS 259 Query: 264 REKLREEIGPRLVELVTRLQDHAG 287 RE+L E+GPRLVELV +++ G Sbjct: 260 RERLIGEVGPRLVELVHKVEADLG 283 >Q7WPR8.1 Q7WPR8_BORBR IclR family regulatory protein Length = 283 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 1/244 (0%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 ++ P+ R L ++S F P ++WLGN +++ +TG+P +TV+R+ Q+L G+L H RKY Sbjct: 33 VVTPLVRALVLISAFSPQERWLGNGQLAQRTGLPPSTVSRIAQSLVHLGYLLHDEAERKY 92 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 LA AVLGLGY + +S LA M A V V L RD LD+ +LE S Sbjct: 93 RLAPAVLGLGYAAIAHSAIQGLAGERMAAFARQHKVHVCLAARDRLDLVVLECRRSLECP 152 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQ 219 L ++VG R IA +P G ++L+ LP ER YLLD++ R +++ LR RV + +AQ Sbjct: 153 VALPLHVGMRVGIAQSPMGWSMLAALPELERCYLLDNVERRMARDWS-RLRRRVWEGMAQ 211 Query: 220 VSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREEIGPRLVELV 279 V + GYC SI E E+ A P+ + P + C G ++ +TR ++ E+GPRL+ + Sbjct: 212 VGETGYCTSIGEWDPELGALATPVLLEGSSPFVLACIGTSQTMTRARVARELGPRLLAMR 271 Query: 280 TRLQ 283 LQ Sbjct: 272 EALQ 275 >Q7WBS5.1 Q7WBS5_BORPA IclR family regulatory protein Length = 293 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 1/244 (0%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 ++ P+ R L ++S F P ++WLGN +++ +TG+P +TV+R+ Q+L G+L H RKY Sbjct: 43 VVTPLVRALVLISAFSPQERWLGNGQLAQRTGLPPSTVSRIAQSLVHLGYLLHDGAERKY 102 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 LA AVLGLGY + +S LA M A V V L RD LD+ +LE S Sbjct: 103 RLAPAVLGLGYAAIAHSAIQGLAGERMAAFARQHKVHVCLAARDRLDLVVLECRRSLECP 162 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQ 219 L ++VG R IA +P G ++L+ LP ER YLLD++ R +++ LR RV + +AQ Sbjct: 163 VALPLHVGMRVGIAQSPMGWSMLAALPELERCYLLDNVERRMARDWS-RLRRRVWEGMAQ 221 Query: 220 VSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREEIGPRLVELV 279 V + GYC SI E E+ A P+ + P + C G ++ +TR ++ E+GPRL+ + Sbjct: 222 VGETGYCTSIGEWNPELGALATPVLLEGSSPFVLACIGTSQTMTRARVARELGPRLLAMR 281 Query: 280 TRLQ 283 LQ Sbjct: 282 EALQ 285