BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0066.p         (239 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2KWM5.1 Q2KWM5_BORA1 Putative capsular polysaccharide biosynthe...   116   2e-24

>Q2KWM5.1 Q2KWM5_BORA1 Putative capsular polysaccharide biosynthesis protein
          Length = 757

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 3/176 (1%)

Query: 64  IQLRTPQARGFFGFLMKRRVGDDNVAIELLGKSRGFTGVLLTALDNRPLVSSRRILISAS 123
           + +  P     FG   K R+G++ V I+          V+LT LD RP+ +SR +L++  
Sbjct: 583 LLIDAPGVWALFGSTGKSRIGNNAVWIQFAPPE--LASVMLTPLDGRPISASRHLLLALG 640

Query: 124 SAVTGNQPGSMPPRPKELIRYKSDAKWWTLEQDAGMNSKPSGPRDVEGPVWMERNEARIS 183
           +   G+QPG+ PPRPK L+ Y+  + W TL  D G +  PSG      P W+ R  A + 
Sbjct: 641 NPTMGSQPGATPPRPKTLVPYRGQSGWMTLNPDPGADG-PSGDMATRAPAWLRRQPAELG 699

Query: 184 LRTQAKRISVYPLDGSGKHMTALDGNRASLNNGMATIHIQAEIAQASPWYEVVADE 239
           L  +  R+ VYPLDG G+   AL       +   A I +Q + A +SPWYE+V ++
Sbjct: 700 LAPRGGRLIVYPLDGEGRRRAALPAAEVMQDAAGARIRVQQDTALSSPWYELVFED 755