BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0043.p (356 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IY55.1 D8IY55_HERSS Diguanylate cyclase/phosphodiesterase with... 231 1e-58 B2JUP6.1 B2JUP6_BURP8 Diguanylate cyclase/phosphodiesterase with... 225 7e-57 C6BM10.1 C6BM10_RALP1 Diguanylate cyclase/phosphodiesterase with... 211 1e-52 B2UKB8.1 B2UKB8_RALPJ Diguanylate cyclase/phosphodiesterase with... 211 1e-52 D8J153.1 D8J153_HERSS Ferredoxin [2Fe-2S]-type protein 194 1e-47 >D8IY55.1 D8IY55_HERSS Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain protein Length = 573 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 121/249 (48%), Positives = 175/249 (70%) Query: 1 MKKMLDLLSLKLLRRIEIRYRLINSFLLVSMLPLLIAGVVAYRESSNASQEKVRIFAGEV 60 M+K LD LS LRRI I YRLI++F+LVS+LPLLI+G++AY E+S A+Q+KVR ++ +V Sbjct: 1 MRKRLDFLSRHFLRRIAIGYRLISAFILVSLLPLLISGLLAYGETSRATQDKVRAYSVQV 60 Query: 61 VKQVAQNMLQQIEKIESSSEELAMSERMQNALAAYYSKTSSERAAGHADIIRLLLENYGS 120 V+Q++QN+L ++EKIE +SE LA+SE+MQ LA YYS + AA R+LL+ YG+ Sbjct: 61 VQQISQNLLLRMEKIEDTSEALALSEKMQRLLADYYSGDADASAAARNSAARVLLDTYGA 120 Query: 121 FEYVNQKYVLDRRHRIMDPQVFAQLGDGVARFAEDAPDMKGRPYWDSYSTAAGQKSVVML 180 YVNQKY+LDR +++DPQ+FA L + R AE+AP++ GR +W Y GQKS+ ML Sbjct: 121 LTYVNQKYLLDRDRQVIDPQIFAPLASSIGRVAEEAPELTGRGWWTLYHAGHGQKSLAML 180 Query: 181 RDILFKGNNRVAGTLFVGLRPLHFSRIFESVNLGYGSRMLVIDARDGHVIVSANAANDNA 240 R++ F NNR AG LFVG+ P +F IF +LGYG+ + ++DA DG V+V + ++ + Sbjct: 181 REVRFTANNRPAGVLFVGVHPSYFFDIFRGADLGYGASISIVDASDGAVVVQSRESSASQ 240 Query: 241 PESGLVAAI 249 + L+ I Sbjct: 241 ADPALLGGI 249 >B2JUP6.1 B2JUP6_BURP8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Length = 980 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 112/256 (43%), Positives = 170/256 (66%), Gaps = 3/256 (1%) Query: 1 MKKMLDLLSLKLLRRIEIRYRLINSFLLVSMLPLLIAGVVAYRESSNASQEKVRIFAGEV 60 +++ + LS LLRR+EIRYRL+ +F+L+S+LP+LI+G ++Y ES+ A +EK IF+ EV Sbjct: 8 LQRAFEYLSQDLLRRVEIRYRLMTAFILLSLLPVLISGYISYAESTAAIKEKAEIFSKEV 67 Query: 61 VKQVAQNMLQQIEKIESSSEELAMSERMQNALAAYYSKTSSERAAGHADIIRLLLENYGS 120 VKQV++N++ ++E++E+ S L +S+++Q AL S + E+ D+ RLLL++YGS Sbjct: 68 VKQVSRNVVLRMEQVETESSLLVLSDQVQAALMKVESGSPKEQNEARQDMTRLLLDHYGS 127 Query: 121 FEYVNQKYVLDRRHRIMDPQVFAQLGDGVARFAEDAPDMKGRPYWDSYSTAAGQKSVVML 180 +++N+KY+LD+ R+MD Q FAQL GV RF A GRPYW SY GQ+++ M+ Sbjct: 128 VDFINEKYLLDQHDRVMDTQAFAQLTRGVMRFVRQALQHNGRPYWGSYDNGVGQQNLGMV 187 Query: 181 RDILFKGNNRVAGTLFVGLRPLHFSRIFESVNLGYGSRMLVIDARDGHVIVSAN---AAN 237 R ++ K NNR G L + +RP HFS IF V LG G+++ V+D + +IV A+ A Sbjct: 188 RAVIGKSNNRQLGHLVLVIRPEHFSTIFNDVALGTGTQIYVLDTSNNKLIVRADDTPAGA 247 Query: 238 DNAPESGLVAAIARXN 253 D A E GL+ I N Sbjct: 248 DAAAEPGLIDKITHNN 263 >C6BM10.1 C6BM10_RALP1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Length = 980 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/271 (41%), Positives = 172/271 (63%), Gaps = 3/271 (1%) Query: 1 MKKMLDLLSLKLLRRIEIRYRLINSFLLVSMLPLLIAGVVAYRESSNASQEKVRIFAGEV 60 +++ D LS LLRR+EIR+RL+ +F+L+S+LP+ I+ ++Y S A +E IF+ EV Sbjct: 8 LQRAFDYLSQDLLRRVEIRHRLVAAFILLSLLPICISASISYVNSIAAIKENAEIFSKEV 67 Query: 61 VKQVAQNMLQQIEKIESSSEELAMSERMQNALAAYYSKTSSERAAGHADIIRLLLENYGS 120 VKQV++N+ ++ +IE+ S L +S ++Q ALA S E++ D+ RLLLE+YGS Sbjct: 68 VKQVSRNIELRMRQIEAESNLLVLSNQVQGALARAASGNGKEQSEARQDMARLLLEHYGS 127 Query: 121 FEYVNQKYVLDRRHRIMDPQVFAQLGDGVARFAEDAPDMKGRPYWDSYSTAAGQKSVVML 180 +++NQKY+LD+ +RI+D Q AQL GV R A D+ G YW SY GQ++V ++ Sbjct: 128 VDFINQKYLLDKNNRILDTQAAAQLTQGVTRLVSRAQDVHGHTYWGSYDNGVGQQNVGVV 187 Query: 181 RDILFKGNNRVAGTLFVGLRPLHFSRIFESVNLGYGSRMLVIDARDGHVIVSANAANDNA 240 R I+ K +NR G L + +RP +FS IF V G G+++ ++DA + +I +A+AAND Sbjct: 188 RAIIDKNSNRQLGNLVLIVRPAYFSTIFNDVATGSGTQIFILDASNEVIIRAADAANDTG 247 Query: 241 --PESGLVAAIAR-XNAPESGLVAAIDAPAG 268 PE GL+ IAR A E+ AI+ G Sbjct: 248 ALPEPGLLENIARNATAGEARSFVAIEGKRG 278 >B2UKB8.1 B2UKB8_RALPJ Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Length = 980 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/271 (41%), Positives = 172/271 (63%), Gaps = 3/271 (1%) Query: 1 MKKMLDLLSLKLLRRIEIRYRLINSFLLVSMLPLLIAGVVAYRESSNASQEKVRIFAGEV 60 +++ D LS LLRR+EIR+RL+ +F+L+S+LP+ I+ ++Y S A +E IF+ EV Sbjct: 8 LQRAFDYLSQDLLRRVEIRHRLVAAFILLSLLPICISASISYVNSIAAIKENAEIFSKEV 67 Query: 61 VKQVAQNMLQQIEKIESSSEELAMSERMQNALAAYYSKTSSERAAGHADIIRLLLENYGS 120 VKQV++N+ ++ +IE+ S L +S ++Q ALA S E++ D+ RLLLE+YGS Sbjct: 68 VKQVSRNIELRMRQIEAESNLLVLSNQVQGALARAASGNGKEQSEARQDMARLLLEHYGS 127 Query: 121 FEYVNQKYVLDRRHRIMDPQVFAQLGDGVARFAEDAPDMKGRPYWDSYSTAAGQKSVVML 180 +++NQKY+LD+ +RI+D Q AQL GV R A D+ G YW SY GQ++V ++ Sbjct: 128 VDFINQKYLLDKNNRILDTQAAAQLTQGVTRLVSRAQDVHGHTYWGSYDNGVGQQNVGVV 187 Query: 181 RDILFKGNNRVAGTLFVGLRPLHFSRIFESVNLGYGSRMLVIDARDGHVIVSANAANDNA 240 R I+ K +NR G L + +RP +FS IF V G G+++ ++DA + +I +A+AAND Sbjct: 188 RAIIDKNSNRQLGNLVLIVRPAYFSTIFNDVATGSGTQIFILDASNEVIIRAADAANDTG 247 Query: 241 --PESGLVAAIAR-XNAPESGLVAAIDAPAG 268 PE GL+ IAR A E+ AI+ G Sbjct: 248 ALPEPGLLENIARNATAGEARSFVAIEGKRG 278 >D8J153.1 D8J153_HERSS Ferredoxin [2Fe-2S]-type protein Length = 112 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 86/96 (89%), Positives = 93/96 (96%) Query: 261 AAIDAPAGKSLCDAMLDSNVDIEHACEKSCACTTCHVVIREGFDTLDDPTDKEEDLLDMA 320 + IDAPAGK+LCDA+LDS++DIEHACEKSCACTTCHVVIREGF+TLDDPTDKEEDLLDMA Sbjct: 17 SVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFETLDDPTDKEEDLLDMA 76 Query: 321 WGLEANSRLSCQVVLGDDDLVVEIPKYTINHASENH 356 WGLEA SRLSCQVVLG+DDL VEIPKYTINHASENH Sbjct: 77 WGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112