BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0039.p (285 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6SUA4.1 A6SUA4_JANMA Methyl-accepting chemotaxis transducer tra... 252 4e-65 D8IY00.1 D8IY00_HERSS Methyl-accepting chemotaxis transducer tra... 221 7e-56 Q1LBK5.1 Q1LBK5_RALME Methyl-accepting chemotaxis protein II (MC... 213 3e-53 C5CXU6.1 C5CXU6_VARPS Methyl-accepting chemotaxis sensory transd... 210 2e-52 A6T1W8.1 A6T1W8_JANMA Methyl-accepting chemotaxis protein 208 7e-52 >A6SUA4.1 A6SUA4_JANMA Methyl-accepting chemotaxis transducer transmembrane protein Length = 568 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 125/283 (44%), Positives = 184/283 (65%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 + N++I +RL GFAL+L+L+V+MT++G+ RLQ++G M L KERLA EW + + Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAV 62 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 D NG RT+A K+ +A+ Q FF+ QM T R + +QK+++ +IK+ E ++LF+ L+V R Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVD 180 Y D+R + KLK G A + ++LPAM YS + AV +++ +I+ + Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 + SGR++LI + A+ +GV +WRL+ ITRPL RAV VA+GDLS + V Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSN 242 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 DE GQL+Q L DM+Q+L KTV EVRSG +TIATAS +IA+GNL Sbjct: 243 DETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNL 285 >D8IY00.1 D8IY00_HERSS Methyl-accepting chemotaxis transducer transmembrane protein Length = 533 Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 122/283 (43%), Positives = 174/283 (61%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 MKN++IG RL +GF +L L+ +M +GVWRL IG+ T M + L+KER A +W A I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 NGVRT AV+KSD+ Q +F+ Q+ R S +QK+++ I AE ++LFD + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVD 180 Y R I +K GD+A A +T L+ M +Y+ V A Q+ VI++ AA ++ Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 YRSGR++L+A+G + +++G +W L+ ITRPL +AV VAAGDL++ + + Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 DE G+LL L M+ NLL V VR G +TI TAS EIATGNL Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNL 283 >Q1LBK5.1 Q1LBK5_RALME Methyl-accepting chemotaxis protein II (MCP-II) (Aspartate chemoreceptor protein) Length = 513 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 172/282 (60%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 MKN+ IG RLG+GF +VL L MT++GV RL+D+ RT M+ L KER+ S+W + Sbjct: 1 MKNLGIGVRLGIGFGVVLLLSTFMTVLGVVRLEDVAGRTHAMMQQPLAKERIVSDWYRLM 60 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 A+ RT A+ +S + +FF + + + +A++ ++ ++ S + F+ +LV R Sbjct: 61 YASVRRTTAITRSSDPSLGQFFAAETKTSAETIAAMRDKIKPMLTSDAEKAAFERILVVR 120 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVD 180 YN+ R+KI KLK+ G A+ LETE +PA Y + + QR I+ A ++ Sbjct: 121 NPYNESRDKIAKLKQDGQAEDAIKVLETEFVPAGDAYLVEIQKLLDIQRTSIDATAEEIN 180 Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 Y S R LIA+GV+AL +GV +W L+ GITRPL RAV VAAGDL+ + VD + Sbjct: 181 RIYESARNGLIALGVIALAIGVAFAWWLTIGITRPLHRAVGFARTVAAGDLTGRIDVDSR 240 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGN 282 DE GQLL L +M++N+L V+EVR G + IAT +++IA GN Sbjct: 241 DETGQLLAALREMNENILGIVKEVRKGTEAIATGTSQIAAGN 282 >C5CXU6.1 C5CXU6_VARPS Methyl-accepting chemotaxis sensory transducer Length = 559 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/282 (40%), Positives = 172/282 (60%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 MKN++IG+RLG+GFALVL+L+ + IGV+RLQ +G+ M+ L KERLA+ W N Sbjct: 1 MKNLKIGTRLGIGFALVLALMACIAGIGVFRLQGVGDAVQEMVQRSLVKERLAANWLLNT 60 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 +N VRT A++KS++A+ Q + + QM+ T S Q +L+ ++ S E + + + +R Sbjct: 61 SSNSVRTFALVKSNDAEVQDYLQKQMSKTSAGISETQAKLEAMLDSPEEQAISADIKEKR 120 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVD 180 Y LRN I+KLK G + A A +L+P ++ Y A + + HQ + I++ A VD Sbjct: 121 SQYVGLRNTILKLKAEGKQEEAAALTNGKLVPMLEVYDASIRGMLTHQAERIDKAADAVD 180 Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 R+GR +I + + ALL+G + +W L+ ITRPL AV+ VA GDL++ + + Sbjct: 181 SLNRAGRMNVIVLAMAALLLGGVLAWLLTRSITRPLNEAVRVAQTVADGDLTSRIESSSR 240 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGN 282 DE GQL+ L +M+ +L V VR G D IATAS EIA GN Sbjct: 241 DETGQLMLALKNMNASLATVVSGVRQGTDAIATASGEIAAGN 282 >A6T1W8.1 A6T1W8_JANMA Methyl-accepting chemotaxis protein Length = 567 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 125/286 (43%), Positives = 173/286 (60%), Gaps = 4/286 (1%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 + N++IG RLGL FA++L L+ M ++GVWRLQD+ T M KERL EW Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHM-EEAAHKERLTHEWYLGN 61 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 AN +RT A I+S++A+ QK F+ +M S +Q ++ LI S EG+KL + +R Sbjct: 62 VANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAA---LETELLPAMKEYSARVSAVAAHQRDVINRNAA 177 Y D+R + KLK + AA LAA +ET++ PAM Y+ V AV + Q+ + R A Sbjct: 122 TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAKA 181 Query: 178 IVDEQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVV 237 VD Y SGRTILI +G +AL++ +W LS ITRPL AV VA+GDL + Sbjct: 182 DVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQS 241 Query: 238 DRKDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 DE GQLL+ L DM+ L+++V +VR+G +TIATAS +IA GNL Sbjct: 242 SSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNL 287