BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0034.p         (174 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A2WHX3.1 A2WHX3_9BURK P pilus assembly protein porin PapC             170   8e-41
D4X7B2.1 D4X7B2_9BURK Fimbrial biogenesis outer membrane usher p...   150   8e-35
C3K3Z8.1 C3K3Z8_PSEFS Putative outer membrane usher protein           147   6e-34
E2Y0L9.1 E2Y0L9_PSEFL Putative uncharacterized protein yraJ           145   2e-33
C3K4P2.1 C3K4P2_PSEFS Putative outer membrane usher protein           145   2e-33

>A2WHX3.1 A2WHX3_9BURK P pilus assembly protein porin PapC
          Length = 914

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 102/155 (65%)

Query: 2   GDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPGR 61
           G+  G+R+ T  GPVWTD +GQAVI  + PY  SR+E+ T++LPRNVDI NG + +E GR
Sbjct: 758 GNIGGVRLQTSSGPVWTDAFGQAVIPSLPPYRRSRVELDTRTLPRNVDIGNGVRTIEAGR 817

Query: 62  GSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPNS 121
           GSVN VTFD ++ RR+ L     DG PLPKGA     +G FVTTVV  GQIFL + VP+ 
Sbjct: 818 GSVNRVTFDVVRTRRVWLEAATEDGRPLPKGASATTEDGTFVTTVVGGGQIFLTDAVPHQ 877

Query: 122 KLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156
            L V   D   C+L  ELP +AD + F+E A A C
Sbjct: 878 TLIVRTSDDSTCTLTVELPDKADDDAFYERARAVC 912


>D4X7B2.1 D4X7B2_9BURK Fimbrial biogenesis outer membrane usher protein
          Length = 816

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 102/161 (63%), Gaps = 9/161 (5%)

Query: 1   VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60
           VGD SG+R+STP G VWTDPWG+AVI  +  Y + ++++AT SL RNVD+ NG   ++P 
Sbjct: 658 VGDLSGVRLSTPAGSVWTDPWGRAVIPSLPAYRNGQVQVATSSLARNVDLINGRYSLDPA 717

Query: 61  RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120
           RGSV  + F  + VRR LL     DG PL KGA VLDA G F+T V   GQIFL    P+
Sbjct: 718 RGSVAAIDFAVVTVRRALLTATYPDGTPLAKGAAVLDASGAFITLVGGGGQIFL----PD 773

Query: 121 SKLE-----VSLPDGRQCSLQFELPSRADPNMFFETAEARC 156
            + E     V+ P+G  C+L F++P+  +P   +E A+A C
Sbjct: 774 LRTESAPYRVTSPEGVACTLAFDIPATPNPTALYERAQATC 814


>C3K3Z8.1 C3K3Z8_PSEFS Putative outer membrane usher protein
          Length = 825

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 99/156 (63%)

Query: 1   VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60
           VGD    +VSTP GPVWTD  GQAVI  +  Y+++ L++ T+SLP+ VD+KNG K++  G
Sbjct: 667 VGDIGAAKVSTPQGPVWTDFSGQAVIPGLQAYSNNHLQVQTQSLPKRVDLKNGTKVLAAG 726

Query: 61  RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120
           RGSVN + FD +KVRR+LL  +   G PLP+GA V   +  FVT+VV +G IFL N    
Sbjct: 727 RGSVNILNFDVVKVRRLLLEAQDEQGRPLPQGAAVFGQDNNFVTSVVGEGMIFLSNIDGP 786

Query: 121 SKLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156
             L+VSLPD + C LQ       D +  +ETA   C
Sbjct: 787 QTLKVSLPDSQSCLLQVNPEQEPDDDQLYETAPVVC 822


>E2Y0L9.1 E2Y0L9_PSEFL Putative uncharacterized protein yraJ
          Length = 823

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 100/156 (64%)

Query: 1   VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60
           VGD    R+ TP GPVWTD  GQAVI  +  Y +SR+E+ T+SLP+ VD+KNG +++  G
Sbjct: 665 VGDIGSARIDTPQGPVWTDFSGQAVIPGLPAYTNSRIEVQTRSLPKRVDLKNGTQVLAAG 724

Query: 61  RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120
           RGSVN V F+ +KVRR+L++ +   G PLP+GA V     +F+T+VV +G IFL +    
Sbjct: 725 RGSVNTVAFEVVKVRRVLISARDEQGRPLPQGASVFGKNNRFLTSVVGEGMIFLNDMDDT 784

Query: 121 SKLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156
             L+VSLPD   C     L  + D + F+ETA A C
Sbjct: 785 QDLQVSLPDSAFCRPSVVLEDQPDHDKFYETATAVC 820


>C3K4P2.1 C3K4P2_PSEFS Putative outer membrane usher protein
          Length = 826

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 98/156 (62%)

Query: 1   VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60
           V D SGI+V+TP GPVWTD  GQAV+ Q++ Y+ + +E+ T++LPRN DI NG   +  G
Sbjct: 668 VADISGIKVNTPSGPVWTDWQGQAVVPQVSAYSRTAVEVETRTLPRNADINNGLAQITAG 727

Query: 61  RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120
           RG+V+ V F     RR LL+    DG PLP+GA V  A G+F+T V D GQ+FL N +  
Sbjct: 728 RGAVDRVDFGVSLTRRALLSVTTVDGKPLPRGASVSSANGEFITLVQDGGQVFLTNALEQ 787

Query: 121 SKLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156
             L V  P    C + ++L ++ D   ++ETA A+C
Sbjct: 788 PSLWVKAPGQPPCEVHYQLQAKPDTQSYYETAAAQC 823