BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0023.p (379 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J141.1 D8J141_HERSS Nitrogen regulation (Sensor histidine kina... 670 0.0 O86056.1 O86056_HERSE Histidine kinase 630 e-178 A4G3P6.1 A4G3P6_HERAR Nitrogen regulation protein NR(II) EC=2.7.... 602 e-170 F1VW30.1 F1VW30_9BURK Nitrogen regulation protein NR(II) 596 e-168 A6SWX3.1 A6SWX3_JANMA Nitrogen regulation (Sensor protein kinase... 589 e-166 >D8J141.1 D8J141_HERSS Nitrogen regulation (Sensor histidine kinase) transcription regulator protein EC=2.7.1.- Length = 366 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/360 (91%), Positives = 342/360 (95%) Query: 20 TERMKTTLPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNG 79 T MKT PSL+GLDLLASAVIILDA GGIVYANAAAENLLESSFKVLSQQKLSELFLNG Sbjct: 7 TTAMKTPFPSLEGLDLLASAVIILDAEGGIVYANAAAENLLESSFKVLSQQKLSELFLNG 66 Query: 80 KELATLFYQAVEHQFADKRLDLVLERIGREPLQVHTIVTALDNADTPVLLELRENVQQLK 139 KEL+ LFYQA+EHQFADKRLDLVLER REPLQVHTIVT LDN D PVLLELRENVQQLK Sbjct: 67 KELSALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDNPDMPVLLELRENVQQLK 126 Query: 140 LDREERLLDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIK 199 LDREER+ DQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIK Sbjct: 127 LDREERIFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIK 186 Query: 200 EADRLQTLVDRLLAPHRRPHIVGDVNIHEVCERVRSLILAEFPNGLTIKRDYDLSIPEFR 259 EADRLQTLVDRLLAPHR PHIVGDVNIHEVCERVRSL++AEFP GLTIKRDYDLSIPEFR Sbjct: 187 EADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSIPEFR 246 Query: 260 GDKEQLIQALLNIVHNAAQALAERIRTGDGELILQTRVMRQVTLAKVRYRLALDLHIIDN 319 GDKEQLIQA+LNIVHNAAQALA+RIR GDGELIL+TRV RQVTL+KVRYRLALDLHIIDN Sbjct: 247 GDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALDLHIIDN 306 Query: 320 GPGISPDIQDRIFYPLVSGREGGSGLGLTLAQTFVQQHMGVIECESRPGCTDFRILIPLP 379 GPGI PDIQDRIFYPLVSGREGGSGLGLTLAQTFV QHMGVIEC+SRPGCTDFRILIPLP Sbjct: 307 GPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 366 >O86056.1 O86056_HERSE Histidine kinase Length = 364 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 318/360 (88%), Positives = 333/360 (92%), Gaps = 2/360 (0%) Query: 20 TERMKTTLPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNG 79 T MKT PSL+GLDLLA ++ + GGIVYANAAA +SSFKVLSQQKLSELFLNG Sbjct: 7 TTAMKTPFPSLEGLDLLALIILDAE--GGIVYANAAARTCWKSSFKVLSQQKLSELFLNG 64 Query: 80 KELATLFYQAVEHQFADKRLDLVLERIGREPLQVHTIVTALDNADTPVLLELRENVQQLK 139 KEL+ LFYQA+EHQFADKRLDLVLER REPLQVHTIVT LDN D PVLLELRENVQQLK Sbjct: 65 KELSALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDNPDMPVLLELRENVQQLK 124 Query: 140 LDREERLLDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIK 199 LDREER+ DQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIK Sbjct: 125 LDREERIFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIK 184 Query: 200 EADRLQTLVDRLLAPHRRPHIVGDVNIHEVCERVRSLILAEFPNGLTIKRDYDLSIPEFR 259 EADRLQTLVDRLLAPHR PHIVGDVNIHEVCERVRSL++AEFP GLTIKRDYDLSIPEFR Sbjct: 185 EADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSIPEFR 244 Query: 260 GDKEQLIQALLNIVHNAAQALAERIRTGDGELILQTRVMRQVTLAKVRYRLALDLHIIDN 319 GDKEQLIQA+LNIVHNAAQALA+RIR GDGELIL+TRV RQVTL+KVRYRLALDLHIIDN Sbjct: 245 GDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALDLHIIDN 304 Query: 320 GPGISPDIQDRIFYPLVSGREGGSGLGLTLAQTFVQQHMGVIECESRPGCTDFRILIPLP 379 GPGI PDIQDRIFYPLVSGREGGSGLGLTLAQTFV QHMGVIEC+SRPGCTDFRILIPLP Sbjct: 305 GPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 364 >A4G3P6.1 A4G3P6_HERAR Nitrogen regulation protein NR(II) EC=2.7.13.3 Length = 357 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 296/357 (82%), Positives = 323/357 (90%) Query: 23 MKTTLPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKEL 82 MK S GLDLLASAV++L ++G I YAN AAENLLE+S KVL+ +L+ELFLN EL Sbjct: 1 MKKPSISFGGLDLLASAVLVLRSDGYIAYANPAAENLLENSNKVLATHRLNELFLNADEL 60 Query: 83 ATLFYQAVEHQFADKRLDLVLERIGREPLQVHTIVTALDNADTPVLLELRENVQQLKLDR 142 +F QAVEHQFADKR DL LER+GREPLQVH +VTALDN D PVL+ELRENVQQLKLDR Sbjct: 61 DVVFQQAVEHQFADKRQDLTLERMGREPLQVHMVVTALDNPDLPVLMELRENVQQLKLDR 120 Query: 143 EERLLDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEAD 202 EERL+DQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERH+KELREYTQVIIKEAD Sbjct: 121 EERLIDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHVKELREYTQVIIKEAD 180 Query: 203 RLQTLVDRLLAPHRRPHIVGDVNIHEVCERVRSLILAEFPNGLTIKRDYDLSIPEFRGDK 262 RLQTLVDRLLAPHR HIVGDVNIHEVCERVRSLI+AEFP+GL I+RDYDLSIPEFRGDK Sbjct: 181 RLQTLVDRLLAPHRSLHIVGDVNIHEVCERVRSLIVAEFPSGLKIRRDYDLSIPEFRGDK 240 Query: 263 EQLIQALLNIVHNAAQALAERIRTGDGELILQTRVMRQVTLAKVRYRLALDLHIIDNGPG 322 EQLIQA+LNI HNAAQ L+ I++GD E++L+TR+ R VTLAKVRYRLALDLHIIDNGPG Sbjct: 241 EQLIQAVLNIAHNAAQVLSSHIKSGDAEIVLRTRIARNVTLAKVRYRLALDLHIIDNGPG 300 Query: 323 ISPDIQDRIFYPLVSGREGGSGLGLTLAQTFVQQHMGVIECESRPGCTDFRILIPLP 379 I PDIQDRIFYPLVSGR+GGSGLGLTLAQTFVQQHMG+IECESRPGCTDFRILIPLP Sbjct: 301 IPPDIQDRIFYPLVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPLP 357 >F1VW30.1 F1VW30_9BURK Nitrogen regulation protein NR(II) Length = 357 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 293/357 (82%), Positives = 323/357 (90%) Query: 23 MKTTLPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKEL 82 MK S+ GLDLLASAV+ILDA G I YANAAAEN+LE SF++L Q L LF+NG +L Sbjct: 1 MKIPFNSVAGLDLLASAVVILDAEGRITYANAAAENMLECSFRLLDQHLLFGLFVNGDKL 60 Query: 83 ATLFYQAVEHQFADKRLDLVLERIGREPLQVHTIVTALDNADTPVLLELRENVQQLKLDR 142 T+F QAV H+FA+KR DL L+RIGRE LQVH +VTALDN D+PVL+E+RENVQQLKLDR Sbjct: 61 ETVFRQAVAHEFAEKRQDLTLQRIGRESLQVHVVVTALDNPDSPVLIEMRENVQQLKLDR 120 Query: 143 EERLLDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEAD 202 EERLLDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEAD Sbjct: 121 EERLLDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEAD 180 Query: 203 RLQTLVDRLLAPHRRPHIVGDVNIHEVCERVRSLILAEFPNGLTIKRDYDLSIPEFRGDK 262 RLQTLVDRLLAPHRRPHIVGDVNIHEVCERVRSL++AEFP+GL I+RDYDLS+P+FRGDK Sbjct: 181 RLQTLVDRLLAPHRRPHIVGDVNIHEVCERVRSLMVAEFPSGLEIRRDYDLSLPDFRGDK 240 Query: 263 EQLIQALLNIVHNAAQALAERIRTGDGELILQTRVMRQVTLAKVRYRLALDLHIIDNGPG 322 EQLIQ +LNI HNAAQAL+ERIR GD L LQTRV RQVTLAKVRYRLALDLHI+DNGPG Sbjct: 241 EQLIQVVLNIAHNAAQALSERIRLGDAVLTLQTRVARQVTLAKVRYRLALDLHILDNGPG 300 Query: 323 ISPDIQDRIFYPLVSGREGGSGLGLTLAQTFVQQHMGVIECESRPGCTDFRILIPLP 379 I +I+DRIF+PLVSGR+GGSGLGLTLAQTF+QQH GVIECES+PGCTDFRILIPLP Sbjct: 301 IPTEIRDRIFFPLVSGRDGGSGLGLTLAQTFIQQHSGVIECESQPGCTDFRILIPLP 357 >A6SWX3.1 A6SWX3_JANMA Nitrogen regulation (Sensor protein kinase) transcription regulator EC=2.7.1.- Length = 345 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 286/345 (82%), Positives = 317/345 (91%) Query: 35 LLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKELATLFYQAVEHQF 94 +LASAV++L + I YAN AAE LLESS K L+ KL+ELF+N +EL +F +A+EHQF Sbjct: 1 MLASAVLVLRPDSDIAYANPAAEILLESSSKALTNHKLNELFINCEELEQVFQEALEHQF 60 Query: 95 ADKRLDLVLERIGREPLQVHTIVTALDNADTPVLLELRENVQQLKLDREERLLDQSQANK 154 ADKRLDLVLER GR+PLQVH +V+ALD+A+TPVL+ELRENVQQLKLDREERL+DQSQANK Sbjct: 61 ADKRLDLVLERHGRDPLQVHVVVSALDSAETPVLIELRENVQQLKLDREERLIDQSQANK 120 Query: 155 ELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADRLQTLVDRLLAP 214 ELIRNLAHEIKNPLGGIRGAAQLLE+ELPERHLKE REYTQVIIKEADRLQTLVDRLLAP Sbjct: 121 ELIRNLAHEIKNPLGGIRGAAQLLEMELPERHLKEFREYTQVIIKEADRLQTLVDRLLAP 180 Query: 215 HRRPHIVGDVNIHEVCERVRSLILAEFPNGLTIKRDYDLSIPEFRGDKEQLIQALLNIVH 274 HR PHIVGDVNIHEVCERVRSLI++EFPNGL IKRDYDLS+PEFRGDKEQLIQA+LNI H Sbjct: 181 HRSPHIVGDVNIHEVCERVRSLIVSEFPNGLKIKRDYDLSVPEFRGDKEQLIQAVLNIAH 240 Query: 275 NAAQALAERIRTGDGELILQTRVMRQVTLAKVRYRLALDLHIIDNGPGISPDIQDRIFYP 334 NAAQ L+ R++ GD EL L+TR+ RQVTLAKVRYRLALDLHIIDNGPGI PDI+DRIFYP Sbjct: 241 NAAQVLSARMKAGDAELTLRTRIARQVTLAKVRYRLALDLHIIDNGPGIPPDIRDRIFYP 300 Query: 335 LVSGREGGSGLGLTLAQTFVQQHMGVIECESRPGCTDFRILIPLP 379 LVSGR+GGSGLGLTLAQTFVQQHMG+IECESRPGCTDFRILIPLP Sbjct: 301 LVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPLP 345