BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0169.p         (127 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VV86.1 F1VV86_9BURK LSU ribosomal protein L19p                      236   6e-61
A4G2T8.1 RL19_HERAR 50S ribosomal protein L19                         235   2e-60
D8IPX8.1 D8IPX8_HERSS 50S ribosomal protein L19                       230   6e-59
A6SVI7.1 RL19_JANMA 50S ribosomal protein L19                         221   3e-56
C3XB67.1 C3XB67_OXAFO 50S ribosomal protein L19                       218   3e-55

>F1VV86.1 F1VV86_9BURK LSU ribosomal protein L19p
          Length = 128

 Score =  236 bits (603), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 120/127 (94%), Positives = 122/127 (96%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           MDLIQQLEQEEIARL K+IP+FAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN
Sbjct: 1   MDLIQQLEQEEIARLGKSIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120

Query: 121 GTAKAEA 127
             AK  A
Sbjct: 121 VVAKKAA 127


>A4G2T8.1 RL19_HERAR 50S ribosomal protein L19
          Length = 128

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/127 (93%), Positives = 122/127 (96%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           MDLIQ LEQEEIARLAKNIP+FAPGDTVIV+VNVVEGTRKRAQAYEGVVISRRNRGLNSN
Sbjct: 1   MDLIQTLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLP RR
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQRR 120

Query: 121 GTAKAEA 127
             +KA A
Sbjct: 121 VVSKAAA 127


>D8IPX8.1 D8IPX8_HERSS 50S ribosomal protein L19
          Length = 127

 Score =  230 bits (586), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/119 (96%), Positives = 119/119 (100%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           MDLIQQLEQEEIARLAKNIP+FAPGDTVIV+VNVVEGTRKRAQAYEGVVI+RRNRGLNSN
Sbjct: 1   MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 60

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNR 119
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLP+R
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSR 119


>A6SVI7.1 RL19_JANMA 50S ribosomal protein L19
          Length = 128

 Score =  221 bits (562), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/127 (93%), Positives = 122/127 (96%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           MDLIQQLEQEEIARLAKNIP+FAPGDTV+V+VNVVEGTRKRAQAYEGVVISRRNRGLNSN
Sbjct: 1   MDLIQQLEQEEIARLAKNIPDFAPGDTVVVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLP RR
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQRR 120

Query: 121 GTAKAEA 127
             AK  A
Sbjct: 121 VAAKQAA 127


>C3XB67.1 C3XB67_OXAFO 50S ribosomal protein L19
          Length = 131

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/119 (91%), Positives = 115/119 (96%)

Query: 1   MDLIQQLEQEEIARLAKNIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60
           M+LIQQLE+EEI RL K+IP+FAPGDTVIVSV VVEG RKRAQAYEGVVISRRNRGLNSN
Sbjct: 7   MNLIQQLEKEEIERLGKSIPDFAPGDTVIVSVMVVEGNRKRAQAYEGVVISRRNRGLNSN 66

Query: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNR 119
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKL+YLRERSGKSARIKEKLP+R
Sbjct: 67  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLFYLRERSGKSARIKEKLPSR 125