BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0157.p         (153 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IPY6.1 D8IPY6_HERSS Two component sensor histidine kinase prot...   159   1e-37
F1VZN9.1 F1VZN9_9BURK Signal transduction histidine kinase            118   2e-25
E6QQD6.1 E6QQD6_9ZZZZ Putative two-component sensor histidine ki...   105   2e-21

>D8IPY6.1 D8IPY6_HERSS Two component sensor histidine kinase protein
           EC=2.7.3.-
          Length = 465

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 99/133 (74%), Gaps = 6/133 (4%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           ++ F+GSIGNR+F +LL GI+VA   T WLA NERRNT+RELR+QH+A+RVEQ+VQA+D 
Sbjct: 1   MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDM------QSPSTGPMADMLKSRLGEDRQIVVQ 121
           + P  R +VL AA NFGFEA  V ++ D        SPST P+ +ML++RLGEDR+I VQ
Sbjct: 61  IPPAQRPIVLQAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQ 120

Query: 122 RETDCAPRRPRNA 134
           RE++C P R  +A
Sbjct: 121 RESECPPLRTDDA 133


>F1VZN9.1 F1VZN9_9BURK Signal transduction histidine kinase
          Length = 457

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 81/125 (64%), Gaps = 1/125 (0%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           ++ F+GSI NRVF+ILLAGILVAT  T  LA  ER   M ++R  H AERV Q+V ALD 
Sbjct: 1   MKNFLGSIANRVFVILLAGILVATGVTAMLAEREREGAMNQMRLNHSAERVVQLVVALDQ 60

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDMQSPSTGPMADMLKSRLGEDRQIVVQRETDCA 127
             P+ R V+L  A NFG  A   +++ +    S G + D+LKSRLG  RQIV++++T C 
Sbjct: 61  AAPEVRPVILQTATNFGVAASMADDL-EALGGSDGALVDLLKSRLGLHRQIVLKQQTGCQ 119

Query: 128 PRRPR 132
           PR  R
Sbjct: 120 PRLAR 124


>E6QQD6.1 E6QQD6_9ZZZZ Putative two-component sensor histidine kinase
          Length = 456

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           +R F  SI NRVFLILLAG+L A   T+WLA N  RN + EL    VA+RVEQ+V +LD 
Sbjct: 1   MRRFFDSIANRVFLILLAGMLFAVGITSWLADNTHRNVLLELHNFRVADRVEQIVLSLDQ 60

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDMQSPSTGPMADMLKSRLGEDRQIVVQRETDC- 126
            TP+ R   +  + +FG +A  V++ G  Q+ ++  +A +LKSRLG +  ++V  +T C 
Sbjct: 61  ATPEMRKAAMQTSADFGLQAQLVHDAGHAQAENSA-LAMLLKSRLGTNHHVIVSTQTGCH 119

Query: 127 --APRRPRNAPXAAAWALPAVRTSCCSWY 153
               +R R  P   A  LP +   C   Y
Sbjct: 120 LDINKRLRAQP-GIARELPRI-NQCQVVY 146