BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0140.p (538 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IPZ1.1 D8IPZ1_HERSS Cation/multidrug efflux pump protein 472 e-131 B4ED15.1 B4ED15_BURCJ Multidrug resistance protein MdtC 311 1e-82 Q39I15.1 Q39I15_BURS3 Acriflavin resistance protein 310 3e-82 B1JYU5.1 B1JYU5_BURCC Acriflavin resistance protein 310 3e-82 A2VRJ2.1 A2VRJ2_9BURK Cation/multidrug efflux pump 310 4e-82 >D8IPZ1.1 D8IPZ1_HERSS Cation/multidrug efflux pump protein Length = 1078 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/291 (80%), Positives = 261/291 (89%), Gaps = 1/291 (0%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA +FL VQDIR+GARQSDSQYEY+L+SDD+ LLR WEPKIR+A SNL +LED+STD Sbjct: 648 VAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTD 707 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQD GLQTTLTIDRETA+R+GVTPQLID++LSDLFGQRQISTIYSGMNQYHVVMEAAPQY Sbjct: 708 QQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 767 Query: 121 WQSPEILNSTYVSLANSTANLSPTTSALGTPPALTAGGKLNSNSSLALTLSTAASKQVPL 180 WQSPE L TYVSLA S+ NLSPTTS+L TPPAL+A GKLN+N+ LA T+STA S+Q+PL Sbjct: 768 WQSPETLRDTYVSLAGSS-NLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPL 826 Query: 181 TSFSSFAPTTTSLSVSHEGQFIASTISFNLAEGVSLSQATQVINDTLARLGVPTAVHGAF 240 +FS F PTTTSLSVSHEGQF+AST+SFNLAEGVSLSQAT I+ +A+LGVPT V G F Sbjct: 827 AAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTF 886 Query: 241 AGTANAFQSSLDSQPVLILTALLAVYIVLGILYESLVHPITIISTLPSAGV 291 AGTANAFQSS SQP+LILTALLAVYIVLGILYESL+HPITIISTLPSAGV Sbjct: 887 AGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGV 937 >B4ED15.1 B4ED15_BURCJ Multidrug resistance protein MdtC Length = 1102 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 217/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGAS FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGASTFLQAAQDIRVGGRQSNAQYQFTLLGDSTADLYKWGPLLTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ G++ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGMEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGKLNS---------------NS 164 WQSPE+LN ++S + +AN S TT+ A GT A +AG N Sbjct: 759 WQSPEMLNQVWISTSGGSANGSQTTNAAAGTFVATSAGTSSAGTAAQSAAAIASDSARNQ 818 Query: 165 SL-------------ALTLSTAASKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 +L ++ST+ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQVGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958 >Q39I15.1 Q39I15_BURS3 Acriflavin resistance protein Length = 1102 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 217/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGARTFLQAAQDIRVGGRQSNAQYQFTLLGDSSADLYKWGPILTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ GL+ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGLEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGK-------------------- 159 WQSPE+LN +VS + +AN S TT+ A GT A +AG Sbjct: 759 WQSPEMLNQVWVSTSGGSANGSQTTNAAAGTYVATSAGTSSAGTATQSAAAIASDSARNQ 818 Query: 160 -LNSNSSLALTLSTAA-------SKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 LNS ++ + +++ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQVGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958 >B1JYU5.1 B1JYU5_BURCC Acriflavin resistance protein Length = 1102 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 216/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGARTFLQAAQDIRVGGRQSNAQYQFTLLGDSSADLYKWGPILTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ GL+ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGLEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGKLNS---------------NS 164 WQSPE+LN ++S + +AN S TT+ A GT A +AG N Sbjct: 759 WQSPEMLNQVWISTSGGSANGSQTTNAAAGTFVATSAGTSSAGTAAQSAAAIASDSARNQ 818 Query: 165 SL-------------ALTLSTAASKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 +L ++ST+ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958 >A2VRJ2.1 A2VRJ2_9BURK Cation/multidrug efflux pump Length = 1102 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 216/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGARTFLQAAQDIRVGGRQSNAQYQFTLLGDSSADLYKWGPILTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ GL+ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGLEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGKLNS---------------NS 164 WQSPE+LN ++S + +AN S TT+ A GT A +AG N Sbjct: 759 WQSPEMLNQVWISTSGGSANGSQTTNAAAGTFVATSAGTSSAGTAAQSAAAIASDSARNQ 818 Query: 165 SL-------------ALTLSTAASKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 +L ++ST+ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958