BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0129.p (222 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQ07.1 D8IQ07_HERSS Response regulator for colanic capsule bio... 352 2e-95 F2LGK8.1 F2LGK8_BURGA LuxR family DNA-binding response regulator 160 1e-37 Q2L102.1 Q2L102_BORA1 Putative two-component response regulator ... 158 5e-37 Q1LG72.1 Q1LG72_RALME Two component transcriptional regulator, L... 157 1e-36 Q46V09.1 Q46V09_CUPPJ Two component transcriptional regulator, L... 157 1e-36 >D8IQ07.1 D8IQ07_HERSS Response regulator for colanic capsule biosynthesis protein Length = 221 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 162/218 (74%), Positives = 193/218 (88%) Query: 5 LNKVLQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAM 64 L KVL +AIADDHP+VL AL++EL RLPE RI L TG++L+ +L+RTPCE+VITDFAM Sbjct: 3 LKKVLHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAM 62 Query: 65 PTDRGDEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELV 124 P + DE+DGF L+KRI+AE PSTKLIVYTAM+N AV++RLYRMGVF+VI+K+EK DEL+ Sbjct: 63 PNEESDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELI 122 Query: 125 NACLATQSTKQVYFPVSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDICD 184 NACLATQS+KQ+YFPVSLRGELEMSWAQGD F +ELT SELEV+RLFV G SLG+IC Sbjct: 123 NACLATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICV 182 Query: 185 RLSRTPSTVSTHKNNAMRKLGLSTDADLIKYAYATGMI 222 RLSRTPST+STHKNNAMRKLGLS+DA+LIKYA++TGMI Sbjct: 183 RLSRTPSTISTHKNNAMRKLGLSSDAELIKYAFSTGMI 220 >F2LGK8.1 F2LGK8_BURGA LuxR family DNA-binding response regulator Length = 218 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 134/214 (62%), Gaps = 6/214 (2%) Query: 9 LQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTDR 68 +++ ++DDHP VL+ ++HEL R+P IV A DELL L+R+ C+V+ITD+AMP Sbjct: 3 IRVILSDDHPTVLSGVRHELARVPTVEIVGSALGADELLALLERSHCDVLITDYAMPG-- 60 Query: 69 GDEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELVNACL 128 G DG L++++R +P+ K++V T + N A++K + + GV ++SK ++ D L+ A Sbjct: 61 GAAVDGLPLLRQLRLGWPAMKVVVLTTIDNPALLKEIAKTGVQGLLSKIDEVDHLIAATH 120 Query: 129 ATQSTKQVYFPVSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDICDRLSR 188 A + P S+R +L + + A + +T E EV+RL+V G S+ +I +L+R Sbjct: 121 AVYAGANYQSP-SVREKLAVQASSARAV---ETMTTKEAEVIRLYVSGLSISEIAAQLNR 176 Query: 189 TPSTVSTHKNNAMRKLGLSTDADLIKYAYATGMI 222 TVS K +AMRKLG+ DADL +YAY TG++ Sbjct: 177 AKQTVSAQKGSAMRKLGIERDADLFQYAYETGLV 210 >Q2L102.1 Q2L102_BORA1 Putative two-component response regulator of capsular synthesis Length = 231 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 130/212 (61%), Gaps = 13/212 (6%) Query: 9 LQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTDR 68 ++I +ADDHP +L ++H+ P +V +A EL+ L++ PC+VV+TD+AMP R Sbjct: 3 IRIILADDHPALLAGIQHQFSNFPTLEVVGLARESGELISLLEKVPCDVVVTDYAMPGGR 62 Query: 69 GDEADGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELVNACL 128 +DG LI +R +P+ KLIV+TAM N A+ + L ++GV +V++K + LV+A Sbjct: 63 F--SDGMALILYLRRIYPNIKLIVFTAMDNGAISQELAKLGVHAVLNKVNDTNHLVSAIH 120 Query: 129 ATQSTKQVYFP---VSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDICDR 185 A + Y P + R E E S + K L+ ELEV+RL++ G S+ +I D+ Sbjct: 121 AAYAGSTYYRPNQARTPRPEAEQS--------EFKPLSRRELEVIRLYISGLSVQEIADQ 172 Query: 186 LSRTPSTVSTHKNNAMRKLGLSTDADLIKYAY 217 L RT T+S+ K++AMRKL ++ DADL ++AY Sbjct: 173 LHRTKQTISSQKSSAMRKLDITRDADLFRFAY 204 >Q1LG72.1 Q1LG72_RALME Two component transcriptional regulator, LuxR family Length = 217 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 137/220 (62%), Gaps = 4/220 (1%) Query: 4 ILNKVLQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFA 63 ++ K +++A+ADDHP+V+ AL+ L R P F++ G EL+++L + P +V +TDF+ Sbjct: 1 MIAKTIRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQNPVDVAVTDFS 60 Query: 64 MPTDRGDEA-DGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADE 122 M GD + DGF L++++ P T+++V +A +N VV R ++G + +SK+++ DE Sbjct: 61 M--GHGDTSLDGFNLLRKLHRRHPDTRIVVVSAQTNPGVVSRAMKLGARAFVSKEDELDE 118 Query: 123 LVNACLATQSTKQVYFPVSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDI 182 +V AC+ + ++ S+R L+ S +LT+ EL+V+RL+ G L +I Sbjct: 119 IVRACIHVTVSNGHFYSPSIRAVLD-SATAAATAAPATDLTLRELDVVRLYAQGFQLTEI 177 Query: 183 CDRLSRTPSTVSTHKNNAMRKLGLSTDADLIKYAYATGMI 222 ++L R+ ST+S+ K AMRKL + T+ DLI+YAY G+I Sbjct: 178 ANKLGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGLI 217 >Q46V09.1 Q46V09_CUPPJ Two component transcriptional regulator, LuxR family Length = 215 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 135/216 (62%), Gaps = 6/216 (2%) Query: 8 VLQIAIADDHPVVLNALKHELGRLPEFRIVLMAHTGDELLESLQRTPCEVVITDFAMPTD 67 ++++A+ADDHP+V+ AL+ L R F I G EL+++L R P ++ ITDF M Sbjct: 5 LIRVAVADDHPLVVTALRDCLHRSARFHIACECTGGSELVQALDRQPADIAITDFCM--G 62 Query: 68 RGDEA-DGFVLIKRIRAEFPSTKLIVYTAMSNSAVVKRLYRMGVFSVISKKEKADELVNA 126 GD DGF L+ R+ T+++V +A SN+A+++R ++G + +SK+++ +E + A Sbjct: 63 HGDATLDGFNLLNRLARRHRGTRIVVVSAQSNAAIIRRAVKLGARAFVSKEDELEETLRA 122 Query: 127 CLATQSTKQVYFPVSLRGELEMSWAQGDAFTQNKELTMSELEVMRLFVGGCSLGDICDRL 186 C +++ Y+ S+R L+ A DA +LT+ ELEV+RL+ G L +I +L Sbjct: 123 CFHVMTSESCYYSPSIRAILD-DAAMVDA--PATDLTLRELEVVRLYAQGMQLNEIAAKL 179 Query: 187 SRTPSTVSTHKNNAMRKLGLSTDADLIKYAYATGMI 222 R+ ST+S+ K AMRKLG++T+ DLI+YAY G+I Sbjct: 180 GRSVSTISSQKTVAMRKLGVNTNTDLIRYAYENGLI 215