BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0126.p (252 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9BDK9.1 B9BDK9_9BURK Chaperone protein FimC 237 1e-60 B9CHZ0.1 B9CHZ0_9BURK Pili assembly chaperone 226 3e-57 B9BW68.1 B9BW68_9BURK Pili assembly chaperone 226 3e-57 B1TDB8.1 B1TDB8_9BURK Pili assembly chaperone 225 4e-57 F2LNL5.1 F2LNL5_BURGA Pili assembly chaperone 224 6e-57 >B9BDK9.1 B9BDK9_9BURK Chaperone protein FimC Length = 254 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 167/241 (69%), Gaps = 7/241 (2%) Query: 9 AVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAKP 68 AVA L+ + A ASV+I GTRV++P ++EV+VRL+NEG P LVQ W+D+G+ +A P Sbjct: 14 AVAATLSLAAAHGHASVVIGGTRVVYPEKDREVTVRLTNEGEKPALVQAWIDSGNPNALP 73 Query: 69 DETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELEEENA 128 D+TK PFILTPPLFRI+P +GQ+LR+++T++ LPQDKE++F+LN+LEVPP V +E Sbjct: 74 DDTKAPFILTPPLFRIDPAQGQSLRVLYTKDALPQDKESLFWLNVLEVPPE-VAPDEAQP 132 Query: 129 NFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVR-EGSGYALELRNPTPYYFSLI 187 N +Q+AFRTRIK+F+RP AL QD+ + P++ W + R +G Y +E NPTPY+ + Sbjct: 133 NSLQLAFRTRIKLFFRPAAL--QDSAAEAPSKVTWKLARLDGGRYGVEAHNPTPYHVTFS 190 Query: 188 NAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLNDYGGAVVGE 247 L + G NS GGMVAPGGT F + L + PAG +V + +L+DYG V G+ Sbjct: 191 RVALKT---GDTVRTNSLGGMVAPGGTATFGIDGLTALPAGPAEVDYTYLDDYGSGVPGK 247 Query: 248 G 248 Sbjct: 248 A 248 >B9CHZ0.1 B9CHZ0_9BURK Pili assembly chaperone Length = 273 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 161/241 (66%), Gaps = 7/241 (2%) Query: 9 AVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAKP 68 AVA L++ S+ ASV+I GTRV++P ++EV+VRL+NEG P LVQ W+DAG+ +A P Sbjct: 33 AVATLVSLVAGSAQASVVIGGTRVVYPEKDREVTVRLTNEGEKPALVQAWIDAGNANALP 92 Query: 69 DETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELEEENA 128 DET PFILTPPLFRI+PG+GQ+LR+++T++ LPQ +E++F+LN+LEVPP E E Sbjct: 93 DETNAPFILTPPLFRIDPGQGQSLRVLYTKDALPQHRESLFWLNVLEVPPE-AENAEAQP 151 Query: 129 NFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVR-EGSGYALELRNPTPYYFSLI 187 N +Q+AFR+RIK+F+RP AL++ A P++ W + R +G Y LE NPTPY+ + Sbjct: 152 NALQLAFRSRIKLFFRPAALESSAA--DAPSKVTWKLARIDGGRYGLEAHNPTPYHVTFS 209 Query: 188 NAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLNDYGGAVVGE 247 L + G N GGMV PG T F + L + P G +V + +L+DYG V G+ Sbjct: 210 RVALKT---GDTVRTNLLGGMVDPGATATFGIDGLTALPGGPVEVDYTYLDDYGTGVAGK 266 Query: 248 G 248 Sbjct: 267 A 267 >B9BW68.1 B9BW68_9BURK Pili assembly chaperone Length = 273 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 161/241 (66%), Gaps = 7/241 (2%) Query: 9 AVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAKP 68 AVA L++ S+ ASV+I GTRV++P ++EV+VRL+NEG P LVQ W+DAG+ +A P Sbjct: 33 AVATLVSLVAGSAQASVVIGGTRVVYPEKDREVTVRLTNEGEKPALVQAWIDAGNANALP 92 Query: 69 DETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELEEENA 128 DET PFILTPPLFRI+PG+GQ+LR+++T++ LPQ +E++F+LN+LEVPP E E Sbjct: 93 DETNAPFILTPPLFRIDPGQGQSLRVLYTKDALPQHRESLFWLNVLEVPPE-AENAEAQP 151 Query: 129 NFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVR-EGSGYALELRNPTPYYFSLI 187 N +Q+AFR+RIK+F+RP AL++ A P++ W + R +G Y LE NPTPY+ + Sbjct: 152 NALQLAFRSRIKLFFRPAALESSAA--DAPSKVTWKLARIDGGRYGLEAHNPTPYHVTFS 209 Query: 188 NAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLNDYGGAVVGE 247 L + G N GGMV PG T F + L + P G +V + +L+DYG V G+ Sbjct: 210 RVALKT---GDTVRTNLLGGMVDPGATATFGIDGLTALPGGPVEVDYTYLDDYGTGVAGK 266 Query: 248 G 248 Sbjct: 267 A 267 >B1TDB8.1 B1TDB8_9BURK Pili assembly chaperone Length = 246 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 161/244 (65%), Gaps = 8/244 (3%) Query: 8 TAVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAK 67 + +AL A T+ + A V+I GTRV+FP +++EV+V+L+NEG +P LVQ W+D GD +A Sbjct: 8 STLALFSALVTSHACADVVISGTRVVFPGNDREVTVKLTNEGKAPALVQAWLDKGDANAS 67 Query: 68 PDETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELEEEN 127 P+ VPF LTP +FR+EPGKGQTLRMI+TREPLP DKE++F+LN+LE+PP+ ++ N Sbjct: 68 PENIDVPFTLTPAMFRMEPGKGQTLRMIYTREPLPADKESLFWLNVLEIPPKAAAADDRN 127 Query: 128 ANFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGSGYALELRNPTPYYFSLI 187 +Q+AFR+RIKV +RP+ L + P Q W +V+ G GYAL+ NPTPY ++ Sbjct: 128 Q--LQIAFRSRIKVMFRPEGLTGNAS--AAPKQLNWRLVKAGEGYALQASNPTPY---IV 180 Query: 188 NAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLNDYGGAVVGE 247 N G S G ++ G V P TQ+FP+K L + P+ G V F ++D+G + E Sbjct: 181 NLGSVSLKATGHK-YDAGMGYVLPRDTQQFPVKQLDALPSSGATVSFGSIDDWGSSTDNE 239 Query: 248 GTVS 251 VS Sbjct: 240 VPVS 243 >F2LNL5.1 F2LNL5_BURGA Pili assembly chaperone Length = 255 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 157/240 (65%), Gaps = 7/240 (2%) Query: 8 TAVALLLAASTASSWASVIIHGTRVIFPSSEKEVSVRLSNEGVSPGLVQMWMDAGDISAK 67 TA + T + ASV+I GTRVI+ +SE EV+++LSNEG +P LVQ W+DAGD+ + Sbjct: 13 TACVAWFSQLTTPAEASVVIGGTRVIYGASEPEVTIKLSNEGQAPALVQSWVDAGDVKSA 72 Query: 68 PDETKVPFILTPPLFRIEPGKGQTLRMIHTREPLPQDKETIFYLNLLEVPPRPVELEEEN 127 P TKVPF++TPP+ RI+P K QTLR+++T EPLP+D+E++F+L++LEVPP+P E + Sbjct: 73 PSTTKVPFVVTPPISRIDPSKSQTLRIVYTGEPLPKDRESVFWLDVLEVPPKP-SAAEAD 131 Query: 128 ANFMQMAFRTRIKVFYRPKALDNQDAYYKGPAQFAWTVVREGSGYALELRNPTPYYFSLI 187 N +Q+AFR+RIK+FYRP L + A P+Q AW + + ALE RNPTPYY S+I Sbjct: 132 MNRIQLAFRSRIKLFYRPDNLKGKSA--DAPSQLAWRLTQVDGKPALEARNPTPYYVSVI 189 Query: 188 NAGLASNVEGGPDIMNSEGGMVAPGGTQKFPLKDLKSTPAGGQKVKFEFLNDYGGAVVGE 247 L S G + GM+ PG T FPL + A G V + LNDYG +V G+ Sbjct: 190 GITLQS---GARKATADDSGMIGPGETHAFPLSG-DALEAAGASVHYTTLNDYGASVDGD 245