BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0119.p         (122 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITH2.1 D8ITH2_HERSS 3-hydroxyacyl-CoA dehydrogenase protein EC...   171   4e-41
A2WF96.1 A2WF96_9BURK 3-hydroxyacyl-CoA dehydrogenase                 167   4e-40
A4JP17.1 A4JP17_BURVG 3-hydroxyacyl-CoA dehydrogenase EC=1.1.1.35     164   4e-39
Q397D0.1 Q397D0_BURS3 3-hydroxyacyl-CoA dehydrogenase EC=1.1.1.35     163   7e-39
F0G2E8.1 F0G2E8_9BURK 3-hydroxy-acyl-CoA dehydrogenase EC=1.1.1....   162   1e-38

>D8ITH2.1 D8ITH2_HERSS 3-hydroxyacyl-CoA dehydrogenase protein EC=1.1.1.35
          Length = 512

 Score =  171 bits (432), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 93/121 (76%)

Query: 1   VTRADQCSDAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAA 60
           + +ADQC    Y  +  +LQA G  +S + DVPGM VMRTV ML NEAAD VNQGVC+AA
Sbjct: 391 LAKADQCRPQRYAEVAGVLQACGLDLSPMQDVPGMMVMRTVCMLVNEAADAVNQGVCNAA 450

Query: 61  DADMAMQKGVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLIMRKTASKGQF 120
           DADMAM+KGVNYPRGPLAWA+ IG+DTV +VL HL A YGEDRYR+SPL+ R  AS  +F
Sbjct: 451 DADMAMRKGVNYPRGPLAWANEIGIDTVNQVLHHLCATYGEDRYRISPLLQRLYASGRKF 510

Query: 121 H 121
           H
Sbjct: 511 H 511


>A2WF96.1 A2WF96_9BURK 3-hydroxyacyl-CoA dehydrogenase
          Length = 518

 Score =  167 bits (424), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 95/122 (77%)

Query: 1   VTRADQCSDAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAA 60
           +TRA QCSDAAY   V L Q AGF V R+ DVPGM  MRTVAMLANEAADTVNQGVCS A
Sbjct: 397 LTRALQCSDAAYADAVGLFQQAGFRVVRIGDVPGMIAMRTVAMLANEAADTVNQGVCSPA 456

Query: 61  DADMAMQKGVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLIMRKTASKGQF 120
           D D+AM+KGVNYP GPLAWADAIG+  V  VLS+LAA+YGEDRYRVSP I+   A+   F
Sbjct: 457 DLDLAMEKGVNYPCGPLAWADAIGIGRVHRVLSNLAASYGEDRYRVSPRIVALHAAGRTF 516

Query: 121 HA 122
            +
Sbjct: 517 RS 518


>A4JP17.1 A4JP17_BURVG 3-hydroxyacyl-CoA dehydrogenase EC=1.1.1.35
          Length = 517

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 87/110 (79%)

Query: 1   VTRADQCSDAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAA 60
           +TRA QCSDAAY   V L Q AGF V  + DVPGM  MRTVAMLANEAADTVNQGVCS A
Sbjct: 397 LTRALQCSDAAYADAVGLFQQAGFRVVGVGDVPGMVAMRTVAMLANEAADTVNQGVCSPA 456

Query: 61  DADMAMQKGVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLI 110
           D D+AM+KGVNYP GPL WADAIG+  V  VLSHLA +YGEDRYRVSP I
Sbjct: 457 DLDLAMEKGVNYPCGPLTWADAIGIGRVHRVLSHLATSYGEDRYRVSPRI 506


>Q397D0.1 Q397D0_BURS3 3-hydroxyacyl-CoA dehydrogenase EC=1.1.1.35
          Length = 518

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 89/110 (80%)

Query: 1   VTRADQCSDAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAA 60
           +TRA QCSDAAY   V   Q AGF V  + DVPGM  MRTVAMLANEAADTVNQGVCS A
Sbjct: 397 LTRALQCSDAAYADAVGQFQQAGFRVVGVADVPGMVAMRTVAMLANEAADTVNQGVCSPA 456

Query: 61  DADMAMQKGVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLI 110
           D D+AM+KGVNYP GPLAWADAIG+  V  VLS+LAA+YGEDRYRVSPLI
Sbjct: 457 DLDLAMEKGVNYPCGPLAWADAIGIGRVHRVLSNLAASYGEDRYRVSPLI 506


>F0G2E8.1 F0G2E8_9BURK 3-hydroxy-acyl-CoA dehydrogenase EC=1.1.1.157
           (Fragment)
          Length = 173

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 89/110 (80%)

Query: 1   VTRADQCSDAAYFSIVALLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAA 60
           +TRA QCSDAAY   V L Q AGF V  + DVPGM  MRTVAMLANEAADTVNQGVCS A
Sbjct: 52  LTRALQCSDAAYADAVGLFQQAGFRVVGVADVPGMVAMRTVAMLANEAADTVNQGVCSPA 111

Query: 61  DADMAMQKGVNYPRGPLAWADAIGLDTVAEVLSHLAAAYGEDRYRVSPLI 110
           D D+AM+KGVNYP GPLAWADAIG+  V  VLS+LAA+YGEDRYRVSP I
Sbjct: 112 DLDLAMEKGVNYPCGPLAWADAIGIGRVHRVLSNLAASYGEDRYRVSPRI 161