BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0114.p (360 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITG9.1 D8ITG9_HERSS Phenylacetic acid degradation NADH oxidore... 618 e-175 Q5NZY8.1 Q5NZY8_AROAE Similar to aerobic phenylacetate degradati... 491 e-137 Q46UT7.1 Q46UT7_CUPPJ Phenylacetate-CoA oxygenase/reductase, Paa... 486 e-135 Q0K1H6.1 Q0K1H6_CUPNH Phenylacetic acid degradation protein E,fl... 484 e-134 B3RBC5.1 B3RBC5_CUPTR Subunit of multicomponent oxygenase, pheny... 479 e-133 >D8ITG9.1 D8ITG9_HERSS Phenylacetic acid degradation NADH oxidoreductase protein Length = 356 Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust. Identities = 294/360 (81%), Positives = 322/360 (89%), Gaps = 4/360 (1%) Query: 1 MSKFYPLTVGNVKNETRDTIVVSFDVPAELKQTFQYQQGQHLTLRSEINGEDLRRSYSIC 60 MSKFYPLT+ +VK ETRDTIVVSF VPAEL+ TF YQQGQHLTLRSEINGEDLRRSYSIC Sbjct: 1 MSKFYPLTISDVKQETRDTIVVSFAVPAELQDTFSYQQGQHLTLRSEINGEDLRRSYSIC 60 Query: 61 SAVQDDQLRVAIKRTQGGVFSTWANDTLKPGQSLQVMPPMGHFNLPLDAANQKHYLAFAA 120 SAVQ+ QLRVAIKR GG+FS WAN++ PGQ + VMPPMGHFN+PL+A N+KHYLAFAA Sbjct: 61 SAVQERQLRVAIKRAPGGLFSNWANESFVPGQRIDVMPPMGHFNVPLEAGNRKHYLAFAA 120 Query: 121 GSGITPMLSIIKTTLLAEPGSRFTLVYGNRASSSVSSVIFKEELTDLKDIYLERLNVVYV 180 GSGITPM+SIIKTTLL+EP S FTLVY NRAS SSVIFKEELTDLKD YLER NVVYV Sbjct: 121 GSGITPMMSIIKTTLLSEPHSHFTLVYANRAS---SSVIFKEELTDLKDAYLERFNVVYV 177 Query: 181 MSREQQDVELFNGRITREKCDQFFKSWIDLDDIDAAFICGPEEMLNAVSASLQANGLDKS 240 MSREQQDVELFNGRI R KCD FF SWIDL D+DAAF+CGPEEM+ AV+ASLQA+GL K+ Sbjct: 178 MSREQQDVELFNGRIDRAKCDAFFASWIDLKDVDAAFLCGPEEMVQAVAASLQAHGLPKT 237 Query: 241 AIKVELFAASIPKHKAVAARPVVGKQECEVTVIVDGYHTVFTMEKEKESLLDAGLKNGID 300 IK ELFAAS P +A AAR VVGKQECEVTVIVDGYH VFTM+KEKES+L+AGLK+GID Sbjct: 238 QIKTELFAASTPP-RAHAARTVVGKQECEVTVIVDGYHNVFTMDKEKESVLEAGLKHGID 296 Query: 301 MRYSCKGGVCATCRCKIVEGKVDMDANYCLEDYEIARGFVLSCQSFPVTDKLLIDFDQDN 360 +RYSCKGGVCATCRCK+VEGKVDMDANY LEDYEIARGFVLSCQSFPV+DKLL+DFDQDN Sbjct: 297 LRYSCKGGVCATCRCKVVEGKVDMDANYALEDYEIARGFVLSCQSFPVSDKLLLDFDQDN 356 >Q5NZY8.1 Q5NZY8_AROAE Similar to aerobic phenylacetate degradation protein Length = 358 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/361 (64%), Positives = 284/361 (78%), Gaps = 4/361 (1%) Query: 1 MSKFYPLTVGNVKNETRDTIVVSFDVPAELKQTFQYQQGQHLTLRSEINGEDLRRSYSIC 60 MSKF+ + V +V+ ETRD IVV+FDVP L +F Y GQHLTLR+EI GED+RRSYSIC Sbjct: 1 MSKFHDMRVASVRPETRDAIVVTFDVPPSLADSFHYAPGQHLTLRTEIGGEDVRRSYSIC 60 Query: 61 SAVQDDQLRVAIKRTQGGVFSTWANDTLKPGQSLQVMPPMGHFNLPLDAANQKHYLAFAA 120 S + LR+AIKR GG+FS WAND +KPG S++VMPP GHF + D + ++Y AFAA Sbjct: 61 SGADERALRIAIKRVHGGLFSNWANDFMKPGVSVEVMPPSGHFGVAPDPQHHRNYAAFAA 120 Query: 121 GSGITPMLSIIKTTLLAEPGSRFTLVYGNRASSSVSSVIFKEELTDLKDIYLERLNVVYV 180 GSGITP+LS IKT L AE GSRFTLVYGNR+S SSV+F+EEL DLKD Y ERLN+V+V Sbjct: 121 GSGITPILSQIKTILAAEQGSRFTLVYGNRSS---SSVMFREELADLKDQYGERLNLVHV 177 Query: 181 MSREQQDVELFNGRITREKCDQFFKSWIDLDDIDAAFICGPEEMLNAVSASLQANGLDKS 240 +SREQQD+ELFNGRI RE+CD WID ID AFICGP +M+ AVSASLQA+G+ KS Sbjct: 178 LSREQQDIELFNGRIDRERCDALLTRWIDAKRIDVAFICGPMDMMEAVSASLQAHGVAKS 237 Query: 241 AIKVELFAASIPK-HKAVAARPVVGKQECEVTVIVDGYHTVFTMEKEKESLLDAGLKNGI 299 AIK+ELFA S+PK + V + PV G ++CEVTVI DG FTM K ++S+LDAGL GI Sbjct: 238 AIKMELFATSLPKGPRPVHSHPVKGTEDCEVTVIQDGRVRQFTMPKNRDSVLDAGLGQGI 297 Query: 300 DMRYSCKGGVCATCRCKIVEGKVDMDANYCLEDYEIARGFVLSCQSFPVTDKLLIDFDQD 359 +M YSCKGGVC+TCRCK+++G+VD D N+ LEDYEIARGF LSCQS+PVTDKL++DFDQ+ Sbjct: 298 EMPYSCKGGVCSTCRCKVIDGEVDHDTNFALEDYEIARGFRLSCQSYPVTDKLVLDFDQE 357 Query: 360 N 360 Sbjct: 358 T 358 >Q46UT7.1 Q46UT7_CUPPJ Phenylacetate-CoA oxygenase/reductase, PaaK subunit Length = 358 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 232/361 (64%), Positives = 281/361 (77%), Gaps = 4/361 (1%) Query: 1 MSKFYPLTVGNVKNETRDTIVVSFDVPAELKQTFQYQQGQHLTLRSEINGEDLRRSYSIC 60 MSKF+ LTV +V ETRD + V+F VP +L T++Y QGQHLTLR+ I GED+RRSYSIC Sbjct: 1 MSKFHELTVASVTRETRDAVAVTFAVPEDLADTYRYVQGQHLTLRAGIGGEDVRRSYSIC 60 Query: 61 SAVQDDQLRVAIKRTQGGVFSTWANDTLKPGQSLQVMPPMGHFNLPLDAANQKHYLAFAA 120 SAVQD +LRVAIKR GG+FS WAND L+PG +L+VMPP GHF++PL + KHY+AFAA Sbjct: 61 SAVQDRRLRVAIKRVDGGMFSNWANDALQPGMTLEVMPPSGHFHVPLSDTHSKHYVAFAA 120 Query: 121 GSGITPMLSIIKTTLLAEPGSRFTLVYGNRASSSVSSVIFKEELTDLKDIYLERLNVVYV 180 GSGITPMLSIIKTTL+ EP SRFTL YGNRAS SSV+FKEEL DLKD YLER N+V++ Sbjct: 121 GSGITPMLSIIKTTLMTEPDSRFTLFYGNRAS---SSVLFKEELEDLKDTYLERFNLVFI 177 Query: 181 MSREQQDVELFNGRITREKCDQFFKSWIDLDDIDAAFICGPEEMLNAVSASLQANGLDKS 240 +SREQ D++LFNGRI EK + W+ DID AFICGP M+ VS +LQ NG+DK+ Sbjct: 178 LSREQLDIDLFNGRIDGEKVRALLRHWVRPQDIDVAFICGPHSMMEEVSQALQENGVDKA 237 Query: 241 AIKVELFAASI-PKHKAVAARPVVGKQECEVTVIVDGYHTVFTMEKEKESLLDAGLKNGI 299 IK ELFA SI A A +G+Q+CEVTVI DG FT+EK KE++LDA L GI Sbjct: 238 RIKRELFATSIPAARPAAHAHKQLGQQQCEVTVIQDGRTRQFTLEKNKETILDAALAQGI 297 Query: 300 DMRYSCKGGVCATCRCKIVEGKVDMDANYCLEDYEIARGFVLSCQSFPVTDKLLIDFDQD 359 ++ YSCKGGVC+TCRCK +EG+VDMD N+ LEDYE+ARGF+LSCQS+ VTDKL+IDFDQ+ Sbjct: 298 ELPYSCKGGVCSTCRCKRIEGEVDMDVNFALEDYEVARGFILSCQSYAVTDKLVIDFDQE 357 Query: 360 N 360 Sbjct: 358 T 358 >Q0K1H6.1 Q0K1H6_CUPNH Phenylacetic acid degradation protein E,flavodoxin reductase EC=1.-.-.- Length = 358 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/361 (64%), Positives = 280/361 (77%), Gaps = 4/361 (1%) Query: 1 MSKFYPLTVGNVKNETRDTIVVSFDVPAELKQTFQYQQGQHLTLRSEINGEDLRRSYSIC 60 MSKF+ LTV +V ETRD + V+F VP EL T++Y QGQHLTLR+ I GED+RRSYSIC Sbjct: 1 MSKFHELTVASVTRETRDAVAVTFAVPDELADTYRYIQGQHLTLRTGIGGEDVRRSYSIC 60 Query: 61 SAVQDDQLRVAIKRTQGGVFSTWANDTLKPGQSLQVMPPMGHFNLPLDAANQKHYLAFAA 120 SAVQD QLRVAIKR GG+FS WAN+ L+PG L+VMPP GHF++PL A +HY+AFAA Sbjct: 61 SAVQDAQLRVAIKRVDGGLFSNWANEQLQPGMKLEVMPPSGHFHVPLSATQARHYVAFAA 120 Query: 121 GSGITPMLSIIKTTLLAEPGSRFTLVYGNRASSSVSSVIFKEELTDLKDIYLERLNVVYV 180 GSGITPMLSIIKTTL AEP SRFTL YGNRAS SSV+FKEEL DLKD YL+R N+V+V Sbjct: 121 GSGITPMLSIIKTTLEAEPQSRFTLFYGNRAS---SSVLFKEELEDLKDTYLQRFNLVFV 177 Query: 181 MSREQQDVELFNGRITREKCDQFFKSWIDLDDIDAAFICGPEEMLNAVSASLQANGLDKS 240 +SREQ D++LFNGRI EK + K W+ DID AFICGP M+ VS +L NG+DK+ Sbjct: 178 LSREQLDIDLFNGRIDGEKVNALLKHWVKPQDIDIAFICGPHSMMEEVSQALLDNGVDKA 237 Query: 241 AIKVELFAASI-PKHKAVAARPVVGKQECEVTVIVDGYHTVFTMEKEKESLLDAGLKNGI 299 IK ELFA SI A A VG+Q+CEVTVI DG FT+EK KE++LDA L GI Sbjct: 238 RIKRELFATSIPAARPAAHAHKQVGQQQCEVTVIQDGRTRSFTLEKNKETVLDAALAQGI 297 Query: 300 DMRYSCKGGVCATCRCKIVEGKVDMDANYCLEDYEIARGFVLSCQSFPVTDKLLIDFDQD 359 ++ YSCKGGVC+TCRCK +EG+VDMD N+ LEDYE+ARGF+LSCQS+ V+D+L+IDFDQ+ Sbjct: 298 ELPYSCKGGVCSTCRCKRIEGEVDMDVNFALEDYEVARGFILSCQSYAVSDRLVIDFDQE 357 Query: 360 N 360 Sbjct: 358 T 358 >B3RBC5.1 B3RBC5_CUPTR Subunit of multicomponent oxygenase, phenylacetic acid degradation, putative 2Fe-2S ferredoxin-NADPH reductase; ring-hydroxylating complex protein 5 Length = 358 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/361 (63%), Positives = 280/361 (77%), Gaps = 4/361 (1%) Query: 1 MSKFYPLTVGNVKNETRDTIVVSFDVPAELKQTFQYQQGQHLTLRSEINGEDLRRSYSIC 60 MSKF+ LTV +V ETRD + V+F VP EL ++Y QGQHLTLR+ I+GED+RRSYSIC Sbjct: 1 MSKFHELTVASVTRETRDAVAVTFAVPDELADAYRYVQGQHLTLRAGIDGEDVRRSYSIC 60 Query: 61 SAVQDDQLRVAIKRTQGGVFSTWANDTLKPGQSLQVMPPMGHFNLPLDAANQKHYLAFAA 120 SAVQD QLRVAIKR GG+FS WA + L+PG L+VMPP GHF++PL A + KHY+AFAA Sbjct: 61 SAVQDAQLRVAIKRVDGGLFSNWAIEQLQPGMKLEVMPPSGHFHVPLSATHAKHYVAFAA 120 Query: 121 GSGITPMLSIIKTTLLAEPGSRFTLVYGNRASSSVSSVIFKEELTDLKDIYLERLNVVYV 180 GSGITPMLSIIKTTL AEP SRFTL YGNRAS SSV+FKEEL DLKD YL+R N+V+V Sbjct: 121 GSGITPMLSIIKTTLQAEPDSRFTLFYGNRAS---SSVLFKEELEDLKDTYLQRFNLVFV 177 Query: 181 MSREQQDVELFNGRITREKCDQFFKSWIDLDDIDAAFICGPEEMLNAVSASLQANGLDKS 240 +SREQ D++LFNGRI +K + K W+ DID AFICGP M+ VS +L NG+DK+ Sbjct: 178 LSREQLDIDLFNGRIDGDKVNALLKHWVRPQDIDVAFICGPHSMMEEVSQALLDNGVDKT 237 Query: 241 AIKVELFAASI-PKHKAVAARPVVGKQECEVTVIVDGYHTVFTMEKEKESLLDAGLKNGI 299 IK ELFA SI A A VG+Q+CEVTVI DG FT+EK KE++LDA L GI Sbjct: 238 RIKRELFATSIPAARPAAHAHKQVGQQQCEVTVIQDGRTRSFTLEKNKETVLDAALAQGI 297 Query: 300 DMRYSCKGGVCATCRCKIVEGKVDMDANYCLEDYEIARGFVLSCQSFPVTDKLLIDFDQD 359 ++ YSCKGGVC+TCRCK +EG+VDMD N+ LEDYE+ARGF+LSCQS+ V+D+L+IDFDQ+ Sbjct: 298 ELPYSCKGGVCSTCRCKRIEGEVDMDVNFALEDYEVARGFILSCQSYAVSDRLVIDFDQE 357 Query: 360 N 360 Sbjct: 358 T 358