BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0031.p (310 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J175.1 D8J175_HERSS LysR family transcription regulator protein 453 e-125 D4XDT3.1 D4XDT3_9BURK LysR family transcriptional regulator 238 6e-61 E3HI14.1 E3HI14_ACHXA Bacterial regulatory helix-turn-helix prot... 236 2e-60 E5UBU1.1 E5UBU1_ALCXX Putative uncharacterized protein 229 5e-58 B2U8C9.1 B2U8C9_RALPJ Transcriptional regulator, LysR family 227 2e-57 >D8J175.1 D8J175_HERSS LysR family transcription regulator protein Length = 312 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/307 (72%), Positives = 261/307 (85%) Query: 1 MSLSLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGV 60 M SLPPLKALKVFEAAVRTRSLT+AAHEL ITHSAVSQQIK LEE+F QPLF+R RGV Sbjct: 1 MPSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 Query: 61 EATEAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDN 120 E TEAA +FY EV+A+LDRIA+AAEQL L GK+R+VR+I APSVAMRWLIPRLSQFQIDN Sbjct: 61 EPTEAALSFYAEVKASLDRIALAAEQLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 Query: 121 PRIEVRVTTTVSEHFEDLKAPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSI 180 PRIEVRVTTT+SE+FED+K PFDV++WRSPLERSG+EC+RFLDDVS PLASPH+LE H I Sbjct: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYECMRFLDDVSVPLASPHFLETHPI 180 Query: 181 TKPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMG 240 P D ++ LIHLS R+ AW QWL KAGV V++K+PGT YEH FLSLQAA+TD G+ MG Sbjct: 181 RVPRDFVEVPLIHLSSRSAAWSQWLSKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 Query: 241 SLALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLMQMGVASAYDP 300 +LALVDDDL+ GRL +LFPE+VLHG+G+HML R+G ALKTFI WL QMG AS++DP Sbjct: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLCRSGAETNPALKTFITWLKQMGQASSFDP 300 Query: 301 DKRYSAD 307 + + AD Sbjct: 301 QRTWPAD 307 >D4XDT3.1 D4XDT3_9BURK LysR family transcriptional regulator Length = 302 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 173/288 (60%), Gaps = 1/288 (0%) Query: 4 SLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEAT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI++LE++ GQPLF R RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRVLEDYLGQPLFAREARGVALL 64 Query: 64 EAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRI 123 AQA++ EV+ +L+RI+ A +L ++RV PS+ M+WLIPRL+ FQ NP + Sbjct: 65 PGAQAYFAEVQGSLERISTATAKLKAPSAGGVLRVCATPSLTMKWLIPRLATFQAANPGV 124 Query: 124 EVRVTTTVSEHFEDLKAP-FDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSITK 182 +V+++T + P DV++ + S CV LDD P+ASP ++E + + Sbjct: 125 DVQLSTQARPFLDRGGDPGSDVLIRHGFMAHSDLACVHCLDDFHIPVASPRFIERNRLYA 184 Query: 183 PADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGSL 242 PAD L L+ +S + W +W A V V +LPG ++H FL +QAA DLGIA+ Sbjct: 185 PADCLAHPLLKISGGMDHWPRWFALAKVDVPPQLPGPVFDHQFLCMQAAMNDLGIALAPW 244 Query: 243 ALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLM 290 L++DD+ RLR LF + L G H L+R + + FIAWL Sbjct: 245 CLLEDDIRADRLRPLFAQPQLPNAGIHALYRQDGPAAASAQLFIAWLC 292 >E3HI14.1 E3HI14_ACHXA Bacterial regulatory helix-turn-helix protein, LysR family protein 104 Length = 302 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 129/292 (44%), Positives = 174/292 (59%), Gaps = 3/292 (1%) Query: 4 SLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEAT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI++LEE+ GQPLF R RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRILEEYVGQPLFAREARGVALL 64 Query: 64 EAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRI 123 AQA++ E++A+L+RIA A +L ++RV PS+ M+WLIPRLS FQ +P + Sbjct: 65 PCAQAYFPEIQASLERIAAATAKLKSPAYGGVLRVCATPSLTMKWLIPRLSAFQARHPGV 124 Query: 124 EVRVTTTVSEHFEDLKAPF--DVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSIT 181 +V++TT F D DV++ + S CV LDD P+ASP ++E + + Sbjct: 125 DVQLTTQ-GRSFLDRGGDTGSDVLIRHGYMAHSDLACVHCLDDFHVPVASPRFIERNRLA 183 Query: 182 KPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGS 241 PAD L L+ ++ + W +W A V V +LPG ++H FL +QAA DLGIA+ Sbjct: 184 APADCLGHPLLKIAGGMDHWPRWFALAKVDVPAQLPGPVFDHQFLCMQAAMNDLGIALAP 243 Query: 242 LALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLMQMG 293 L++DD+ RLR LF L G H L+R + + FI WL + G Sbjct: 244 WCLLEDDIRADRLRPLFDGPQLPNAGIHALYRQDGPAAASAQLFIEWLREQG 295 >E5UBU1.1 E5UBU1_ALCXX Putative uncharacterized protein Length = 302 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 131/288 (45%), Positives = 172/288 (59%), Gaps = 3/288 (1%) Query: 4 SLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEAT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI++LE++ GQPLF R RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRILEDYIGQPLFAREARGVTLL 64 Query: 64 EAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRI 123 AQA++ EV+A+L+RIA A +L G ++RV PS+ M+WLIPRLS FQ +P I Sbjct: 65 PCAQAYFPEVQASLERIAAATAKLRSPGHGGVLRVSATPSLTMKWLIPRLSAFQSLHPGI 124 Query: 124 EVRVTTTVSEHFEDL--KAPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSIT 181 +V++TT F D + DV + + + CV LDD P+ASP ++E + + Sbjct: 125 DVQLTTQ-GRSFLDRGDEGGSDVFIRHGFVTHAEMSCVHCLDDFHVPVASPRFIERNRLA 183 Query: 182 KPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGS 241 PAD L L+ ++ + W +W A V V +LPG ++H FL +QAA DLGIA+ Sbjct: 184 APADCLGYPLLKVAGGMDHWPRWFALARVDVPAQLPGPVFDHQFLCMQAAMNDLGIALAP 243 Query: 242 LALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWL 289 L+ DDL RLR LF + L G H L R A + FI WL Sbjct: 244 WCLLQDDLRADRLRPLFLQPRLPNAGVHALFRPDAPAAAAARHFIDWL 291 >B2U8C9.1 B2U8C9_RALPJ Transcriptional regulator, LysR family Length = 311 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 171/287 (59%), Gaps = 1/287 (0%) Query: 5 LPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEATE 64 LPPL AL+ FE+A R S T A EL++TH A+S+Q++ LE G LF RL R VE T+ Sbjct: 4 LPPLNALRAFESAARHLSFTRAGDELNVTHGAISRQVQALEAWLGVSLFRRLNRRVELTD 63 Query: 65 AAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRIE 124 A Q + +E+ ALDRI+ +++ L RI+RV + P+ MRWLIPRLS FQ+ PR+E Sbjct: 64 AGQRYLSEIGVALDRISTSSQALRDRDAARILRVNSIPTFTMRWLIPRLSTFQMRFPRVE 123 Query: 125 VRVTTTVSEHFEDLKAPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSITKPA 184 VR+TT++ E EDL FDV++ P +GF RFLD+ P+ SP LE ++ P+ Sbjct: 124 VRLTTSI-EEIEDLPDHFDVIIRGGPEIHAGFRSGRFLDESRFPVCSPVLLERLPLSTPS 182 Query: 185 DLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGSLAL 244 +L +L+H W WL+ AGVP + ++EHF+LS+QAA LG+AMG AL Sbjct: 183 ELRHHTLLHSDTLPSVWPSWLVLAGVPNLRPAHALTFEHFYLSIQAAIDGLGVAMGPSAL 242 Query: 245 VDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLMQ 291 + DDL GRL FP + L + ++ ++ F AWL + Sbjct: 243 ITDDLEEGRLVAPFPNLALGARSYYWYSPARNLGDEVVQAFCAWLGE 289