BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0025.p         (114 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D6TUX5.1 D6TUX5_9CHLR Transcriptional regulator, BadM/Rrf2 family      88   4e-16
Q2W003.1 Q2W003_MAGSA Predicted transcriptional regulator              82   2e-14
E3B3R6.1 E3B3R6_9SPHI Transcriptional regulator, BadM/Rrf2 family      82   2e-14
B5WWA9.1 B5WWA9_9BURK Transcriptional regulator, BadM/Rrf2 family      81   4e-14
D5W6V2.1 D5W6V2_BURSC Transcriptional regulator, BadM/Rrf2 family      81   6e-14

>D6TUX5.1 D6TUX5_9CHLR Transcriptional regulator, BadM/Rrf2 family
          Length = 164

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 60/96 (62%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           ++S  IA SVNTNPVF+R +L +L KAHLV    G   G  LA+P  +I+L E+YQAVE+
Sbjct: 27  MTSDQIAGSVNTNPVFIRRILGRLHKAHLVNVHHGTSAGWTLAQPPEKISLLEVYQAVEQ 86

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAM 96
           EP+ + +  P +  C V  G+  AL    S+ E AM
Sbjct: 87  EPLFELHHTPPNQGCVVGKGIQPALKRFYSDAEAAM 122


>Q2W003.1 Q2W003_MAGSA Predicted transcriptional regulator
          Length = 121

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 4/113 (3%)

Query: 2   SSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAV--E 59
           +S  IA SVNTNPV VR LL  L+KA LV +  G  GG+ LARPA +I+L +I++AV  E
Sbjct: 7   TSEWIAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHRAVDEE 66

Query: 60  EEPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTI 112
           EEP L HN +P +P C V   +   L  V+   + A   VL   KLSE+V  +
Sbjct: 67  EEPAL-HN-QPPNPACPVGRNIQSVLVRVMERADAARDAVLSTTKLSEVVGAL 117


>E3B3R6.1 E3B3R6_9SPHI Transcriptional regulator, BadM/Rrf2 family
          Length = 136

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 69/113 (61%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           ++S  +A S+N NPV VR+ L  L K +LV +KEGK GGA L +PA++I L+++Y+AV++
Sbjct: 24  VTSDYLAGSININPVLVRKELINLRKHNLVGSKEGKNGGAYLLKPATEIRLSDVYEAVKQ 83

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTIC 113
            P+L       +P C V   ++  LD + ++ E A++K L    L + V+   
Sbjct: 84  SPLLGQAKNTPNPACPVGRQINQHLDSLHADAERALVKQLNTTTLQQFVNLFA 136


>B5WWA9.1 B5WWA9_9BURK Transcriptional regulator, BadM/Rrf2 family
          Length = 149

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 62/113 (54%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           LSS  IA SVNTNP  +R LL  LS A L  ++ G GGGA LAR   QI L ++Y+AVE+
Sbjct: 25  LSSEMIAGSVNTNPALIRRLLAMLSDAGLTTSQMGAGGGALLARRPEQITLLDVYRAVED 84

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTIC 113
             +   +    +P C V   +   L  +I E + AM   L GR L++  + + 
Sbjct: 85  AQLFGVHREEPNPACMVGRNIQGVLRSIIDEAQQAMEAALAGRTLADATADVV 137


>D5W6V2.1 D5W6V2_BURSC Transcriptional regulator, BadM/Rrf2 family
          Length = 149

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           LSS  IA SVNTNPV +R LL  LS+A L  ++ G GGGA LAR   QI L ++Y+AVE+
Sbjct: 25  LSSEMIAGSVNTNPVLIRRLLAMLSEAGLTTSQMGAGGGALLARRPEQITLLDVYRAVED 84

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTIC 113
             +   +    +P C V   +   L  ++ E + AM   L  R L++  + + 
Sbjct: 85  AQLFALHREEPNPACMVGRNIQSVLSGIVDEAQQAMEAALAARTLADATADVV 137