BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0104.p         (194 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E1VAB3.1 E1VAB3_HALED Chorismate mutase EC=5.4.99.5                   125   3e-27
D8IX83.1 D8IX83_HERSS Chorismate mutase protein EC=5.4.99.5           125   3e-27
D6UZV5.1 D6UZV5_9BACT Chorismate mutase                               102   2e-20
Q3JPT7.1 Q3JPT7_BURP1 Chorismate mutase                                90   2e-16
E1T6W0.1 E1T6W0_BURSG Chorismate mutase                                90   2e-16

>E1VAB3.1 E1VAB3_HALED Chorismate mutase EC=5.4.99.5
          Length = 197

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 94/161 (58%), Gaps = 9/161 (5%)

Query: 35  DAARQKIDGLLTLIDQRLDVAVKVAQTKWNSGAPINDPARERQILDDLT--ASLKTADTQ 92
           D AR+ +DGL+  ++QRL +A  VA  KWNS APIN P RE QIL  +   A  +  D Q
Sbjct: 38  DEARETVDGLIAQVEQRLSIAPDVAMAKWNSEAPINVPEREAQILKRVVEEAQHQGVDHQ 97

Query: 93  EKSFMRRFFQAQFDAGKIIQAALHAQWRQEAHARFANPPDLARDIRPELDRLTPLLIDAL 152
                R FFQ QFDA K +Q  LH QW++E+   F NPP+LA DIRP+LD LTP LI +L
Sbjct: 98  ---LARAFFQDQFDASKAVQKQLHQQWQKESQPPFDNPPNLANDIRPQLDTLTPQLIQSL 154

Query: 153 GQVRPLLQQPDAKTYLRQRADVLVRGDSNGVVRAEALRVLL 193
            + +    +  A+ YL + A   V  +      AEAL + L
Sbjct: 155 SEFQTFESESAAQQYLEESAARAVANNE----YAEALEIAL 191


>D8IX83.1 D8IX83_HERSS Chorismate mutase protein EC=5.4.99.5
          Length = 189

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 101/167 (60%), Gaps = 6/167 (3%)

Query: 28  SMSTTPDDAARQKIDGLLTLIDQRLDVAVKVAQTKWNSGAPINDPARERQILDDLTASLK 87
           + ST P  A R  ++ LL+L   RLDVA  VA++KWNS API+DPARE  ILDD+ A  +
Sbjct: 24  ATSTPP--AVRSDVEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQ 81

Query: 88  TADTQEKSFMRRFFQAQFDAGKIIQAALHAQWRQEAHARFANPPDLARDIRPELDRLTPL 147
                + ++ RRFFQ QF+AGKI+Q  LH QWR E    FANPPDLA  +RP LDRLTP 
Sbjct: 82  KLGL-DAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPD 140

Query: 148 LIDALGQVRPLLQQPDAKTYLRQRADVLVRGDSNGVVR---AEALRV 191
           L+ AL ++     +P  +  L +    ++  D    VR    EALR 
Sbjct: 141 LLAALARLNGHWCEPAVQRDLAELDAEILGADYPPAVRERATEALRC 187


>D6UZV5.1 D6UZV5_9BACT Chorismate mutase
          Length = 204

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 21  LLLAGCESMSTTPDDAARQKIDGLLT---LIDQRLDVAVKVAQTKWNSGAPINDPARERQ 77
           LL + C   +   ++  R + + L T   L+  RL +  +VAQTKWN+GAPI DPARE+Q
Sbjct: 17  LLPSACALSAGKAENIDRTQAEALATVQALMAARLTLMTQVAQTKWNTGAPIEDPAREQQ 76

Query: 78  ILDDLTASLKTADTQEKSFMRRFFQAQFDAGKIIQAALHAQWRQEAHARFANPPDLARDI 137
           +LDD+      A+     ++  FF+ Q +AGK IQ  L AQW  E   +F +P DL  DI
Sbjct: 77  LLDDIRLRAAQANL-SPDWVVHFFRLQVEAGKEIQYMLFAQWDSEERGKFDHPVDLRADI 135

Query: 138 RPELDRLTPLLIDALGQVRPLL 159
           RP LD++TP LI AL    P +
Sbjct: 136 RPRLDQMTPKLIGALSVAWPAI 157


>Q3JPT7.1 Q3JPT7_BURP1 Chorismate mutase
          Length = 205

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 41  IDGLLTLIDQRLDVAVKVAQTKWNSGAPINDPARERQILDDLTASLKTADTQEKSFMRRF 100
           +  L+ L  QRL +A  VA  KW +G PI+DP RE  +L D+     TA+  + ++ R F
Sbjct: 42  LTNLVALASQRLALAEPVAHWKWLNGKPISDPPREAALLADVE-QRATANGVDPAYARAF 100

Query: 101 FQAQFDAGKIIQAALHAQWRQEAHARFANPPDLARDIRPELDRLTPLLIDALGQVRPLLQ 160
           F  Q  A K +Q AL A WR   H      PDLA   RP+LDRLT  LI AL +V PL  
Sbjct: 101 FDDQIAASKQVQNALFATWRAT-HGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRD 159

Query: 161 QPDAKTYLRQRAD---VLVRGDSNGVVRAEALRVLLE 194
            PD  + L +       L R DS    R +AL   L 
Sbjct: 160 APDCPSRLARSVSNWKTLTRYDSG---RKDALGTALS 193


>E1T6W0.1 E1T6W0_BURSG Chorismate mutase
          Length = 198

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 5   RYAARLSVLLQAFVLMLLLAGCESMSTTPDDAARQKIDGLLTLIDQRLDVAVKVAQTKWN 64
           R+AAR ++ L A+ +              DD A   +  L+ L+ QRL +A  VA+ KW 
Sbjct: 6   RFAARCALALFAYAVFTPAPAVADG----DDTA---LTNLIALVSQRLALAEPVARWKWA 58

Query: 65  SGAPINDPARERQILDDLTASLKTADTQEKSFMRRFFQAQFDAGKIIQAALHAQWRQEAH 124
              PI D  RE  +L D+      AD  + +F R FFQ Q DA K +Q AL A WR    
Sbjct: 59  KHQPITDKPREEALLADVQKRAAAADV-DPAFARAFFQDQIDASKEVQNALFANWRASQP 117

Query: 125 ARFANPPDLARDIRPELDRLTPLLIDALGQVRPLLQQPDAKTYLRQ 170
            +    PDLA   RP+LDRLT  LI  L +V+PL   PD  + + Q
Sbjct: 118 PQ-EPAPDLATSTRPQLDRLTQALIAGLARVQPLRAAPDCPSRVAQ 162