BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0080.p         (111 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IV94.1 D8IV94_HERSS Putative uncharacterized protein                153   9e-36
A1VJN2.1 A1VJN2_POLNA Helix-turn-helix domain protein                 132   1e-29
A9C0V5.1 A9C0V5_DELAS Transcriptional regulator, XRE family           128   3e-28
E6V2R2.1 E6V2R2_VARPD Helix-turn-helix domain protein                  99   2e-19
A6T130.1 A6T130_JANMA Uncharacterized conserved protein                98   3e-19

>D8IV94.1 D8IV94_HERSS Putative uncharacterized protein
          Length = 105

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 84/103 (81%)

Query: 9   KPPKSEPTESSDNLPSPLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAI 68
           KP +       + L S LVQSFGIGVRQLR A+GWSQERLAENSNLNRSYIGEIERG AI
Sbjct: 3   KPVRPARQADVEALSSALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAI 62

Query: 69  ASLVTVEKLAVALKLTPSALVTRGEAISQMNLVRGIKLMAIAC 111
           ASLVTVEKLA AL L+PSALVT GE I Q NLVRG++LMAIAC
Sbjct: 63  ASLVTVEKLATALTLSPSALVTHGERIHQQNLVRGLQLMAIAC 105


>A1VJN2.1 A1VJN2_POLNA Helix-turn-helix domain protein
          Length = 90

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 77/86 (89%)

Query: 26  LVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIASLVTVEKLAVALKLTP 85
           LV+ FGI +RQ REA+ WSQE+LAE+SNLNRSY+GEIERG AIASL TVEKLA+AL ++P
Sbjct: 5   LVECFGIALRQSREARNWSQEQLAEHSNLNRSYVGEIERGSAIASLATVEKLALALGISP 64

Query: 86  SALVTRGEAISQMNLVRGIKLMAIAC 111
           SALV RGEA+SQ N+VRGI+LMAIAC
Sbjct: 65  SALVGRGEAVSQANVVRGIRLMAIAC 90


>A9C0V5.1 A9C0V5_DELAS Transcriptional regulator, XRE family
          Length = 90

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 74/90 (82%)

Query: 22  LPSPLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIASLVTVEKLAVAL 81
           + + LV SFGI VRQ REA GWSQERLAE+S+LNRSY+GEIERG  IASL+TVEKLAV+L
Sbjct: 1   MSTRLVTSFGIAVRQAREAHGWSQERLAEHSDLNRSYVGEIERGRVIASLLTVEKLAVSL 60

Query: 82  KLTPSALVTRGEAISQMNLVRGIKLMAIAC 111
            + PSALV RGE ++   LVRG++L AIAC
Sbjct: 61  GVQPSALVMRGETVAHDQLVRGLRLAAIAC 90


>E6V2R2.1 E6V2R2_VARPD Helix-turn-helix domain protein
          Length = 89

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 61/87 (70%)

Query: 25  PLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIASLVTVEKLAVALKLT 84
             V+ FG+ VRQLREA GWSQE+LAE S+LNRSY+GE+ERG  I S+VT +KLA AL + 
Sbjct: 3   AFVEDFGVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGIN 62

Query: 85  PSALVTRGEAISQMNLVRGIKLMAIAC 111
              L+ R E + Q  L R I L AIAC
Sbjct: 63  IVNLLARCEQLEQSRLARRINLAAIAC 89


>A6T130.1 A6T130_JANMA Uncharacterized conserved protein
          Length = 109

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 65/101 (64%)

Query: 11  PKSEPTESSDNLPSPLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIAS 70
           P  +P   +    S L  S G+ VRQLREAQGWSQE LAE + LNRSY+GE+ERG  I S
Sbjct: 9   PGYKPDRLTGYAMSKLCVSLGLAVRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTIPS 68

Query: 71  LVTVEKLAVALKLTPSALVTRGEAISQMNLVRGIKLMAIAC 111
           L+T++KLA AL L  S L+   E IS +  V  + L AIAC
Sbjct: 69  LITLDKLASALGLKVSDLLLHCERISGLQAVYKLNLAAIAC 109