BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0066.p         (54 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C5D0S3.1 C5D0S3_VARPS Binding-protein-dependent transport system...    91   8e-17
D5WJC5.1 D5WJC5_BURSC Binding-protein-dependent transport system...    84   7e-15
B5WLI1.1 B5WLI1_9BURK Binding-protein-dependent transport system...    82   2e-14
F0GIY4.1 F0GIY4_9BURK ABC-type sugar transporter permease              82   3e-14
B9C6J3.1 B9C6J3_9BURK Binding-protein-dependent transport system...    82   3e-14

>C5D0S3.1 C5D0S3_VARPS Binding-protein-dependent transport systems inner
           membrane component
          Length = 287

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query: 1   VISIAAYEAAFENYDYSMASAVAMIMGAVQLGVVVIVLGARNLFYRGPVTGGKG 54
           VISIAAYEAAFE YDYSMASAVAM+MG VQL VV  VLGAR +FYRGPV+GGKG
Sbjct: 234 VISIAAYEAAFERYDYSMASAVAMLMGVVQLFVVAAVLGARGMFYRGPVSGGKG 287


>D5WJC5.1 D5WJC5_BURSC Binding-protein-dependent transport systems inner
           membrane component
          Length = 295

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 1   VISIAAYEAAFENYDYSMASAVAMIMGAVQLGVVVIVLGARNLFYRGPVTGGKG 54
           V+SIAA EAAFE+YDYS+ASA+AM+MG VQL VV  +LGAR  FYRGPVTGGKG
Sbjct: 242 VMSIAAAEAAFESYDYSLASAIAMVMGFVQLLVVAALLGARRWFYRGPVTGGKG 295


>B5WLI1.1 B5WLI1_9BURK Binding-protein-dependent transport systems inner
           membrane component
          Length = 292

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query: 1   VISIAAYEAAFENYDYSMASAVAMIMGAVQLGVVVIVLGARNLFYRGPVTGGKG 54
           V+SIAA EAAFE+YDYS+ASA+AM+MG VQL VV  +LGAR  FYRGP TGGKG
Sbjct: 239 VMSIAAAEAAFESYDYSLASAIAMVMGFVQLLVVAALLGARRWFYRGPATGGKG 292


>F0GIY4.1 F0GIY4_9BURK ABC-type sugar transporter permease
          Length = 290

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 46/54 (85%)

Query: 1   VISIAAYEAAFENYDYSMASAVAMIMGAVQLGVVVIVLGARNLFYRGPVTGGKG 54
           VISIAA EAAFENYDYS+ASA+A++MG VQL VV  +LGAR  FY GPVTGGKG
Sbjct: 237 VISIAAAEAAFENYDYSLASAIAIVMGFVQLLVVASMLGARRFFYSGPVTGGKG 290


>B9C6J3.1 B9C6J3_9BURK Binding-protein-dependent transport systems inner
           membrane component
          Length = 290

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 46/54 (85%)

Query: 1   VISIAAYEAAFENYDYSMASAVAMIMGAVQLGVVVIVLGARNLFYRGPVTGGKG 54
           VISIAA EAAFENYDYS+ASA+A++MG VQL VV  +LGAR  FY GPVTGGKG
Sbjct: 237 VISIAAAEAAFENYDYSLASAIAIVMGFVQLLVVASMLGARRFFYSGPVTGGKG 290