BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0049.p         (267 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQP7.1 D8IQP7_HERSS Transcription regulator protein                 479   e-133
F1W1W4.1 F1W1W4_9BURK Putative transcriptional regulator (IclR f...   445   e-123
B0LFS8.1 B0LFS8_9BACT IclR family transcriptional regulator           442   e-122
A6SVX6.1 A6SVX6_JANMA Transcriptional regulator, IclR family          433   e-119
A4G3C1.1 A4G3C1_HERAR Putative transcriptional regulator (IclR f...   416   e-114

>D8IQP7.1 D8IQP7_HERSS Transcription regulator protein
          Length = 261

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/256 (92%), Positives = 246/256 (96%)

Query: 1   MKKEAHDETGAISIQVIERMVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVK 60
           MKKEA +    ISIQVIERMVSLLDALA YPDPVSLKELSAAT LHPSTAHRILNDLVVK
Sbjct: 1   MKKEAGETEQHISIQVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVVK 60

Query: 61  RFVDRSEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIV 120
           RFVDR EPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQ+DEIV
Sbjct: 61  RFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIV 120

Query: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSIT 180
           YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLS+DDPK VR+YATRTGLAGHNKNSIT
Sbjct: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSIT 180

Query: 181 DLSKLERELSMVRALGYARDNEELELGVRCMAAGIRDDSGKLVAGLSISAPADRLQEDWV 240
           DL+KLERELSMVRALGYARDNEELELGVRCMAAGI DDSGKLVAGLSISAPADRLQ++WV
Sbjct: 181 DLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWV 240

Query: 241 EDLVTTAAQISSALGF 256
           EDLV+TA+QISSALG+
Sbjct: 241 EDLVSTASQISSALGY 256


>F1W1W4.1 F1W1W4_9BURK Putative transcriptional regulator (IclR family)
          Length = 261

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/260 (81%), Positives = 238/260 (91%)

Query: 1   MKKEAHDETGAISIQVIERMVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVK 60
           M   AH ET   SIQVIER+ SLLDALA YPDPVSLK+LSA T LHPSTAHRILNDLV+K
Sbjct: 1   MTTTAHPETDKTSIQVIERLTSLLDALARYPDPVSLKQLSADTGLHPSTAHRILNDLVLK 60

Query: 61  RFVDRSEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIV 120
           RFV+R+EPG YRLGMRLLELGN+VKSRL+VREAA+DFMRALHRKT QT+NLSVRQ DEIV
Sbjct: 61  RFVERAEPGAYRLGMRLLELGNVVKSRLNVREAAVDFMRALHRKTFQTVNLSVRQGDEIV 120

Query: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSIT 180
           YIDR+FSERSGMQVVRAIGGRAPLHLTSTGKLFLS+DDPK+VRSYATRTGL+GHNKNSIT
Sbjct: 121 YIDRAFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKSVRSYATRTGLSGHNKNSIT 180

Query: 181 DLSKLERELSMVRALGYARDNEELELGVRCMAAGIRDDSGKLVAGLSISAPADRLQEDWV 240
           +L+ LERELS+VRA G+ARDNEELELGVRCMAAGIRDDSG+L+AGLSISAPADRLQE+W+
Sbjct: 181 ELTTLERELSLVRARGFARDNEELELGVRCMAAGIRDDSGRLIAGLSISAPADRLQEEWL 240

Query: 241 EDLVTTAAQISSALGFVNQQ 260
           EDL+ T  QIS+ LG+  Q+
Sbjct: 241 EDLMLTVNQISAVLGYSAQE 260


>B0LFS8.1 B0LFS8_9BACT IclR family transcriptional regulator
          Length = 259

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/244 (87%), Positives = 228/244 (93%)

Query: 13  SIQVIERMVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVKRFVDRSEPGTYR 72
           SIQVIERMV+LLDALA Y DPVSLKELS  + LHPSTAHRILND+V+ RFVDR EPGTYR
Sbjct: 12  SIQVIERMVALLDALANYTDPVSLKELSKVSGLHPSTAHRILNDMVITRFVDRVEPGTYR 71

Query: 73  LGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFSERSGM 132
           LGMRLLELGN+VKSRLSVREAALDFMRALH+KT QTINLSVRQ DEIVYIDR+FSERSGM
Sbjct: 72  LGMRLLELGNVVKSRLSVREAALDFMRALHKKTQQTINLSVRQGDEIVYIDRAFSERSGM 131

Query: 133 QVVRAIGGRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSITDLSKLERELSMV 192
           QVVRAIGGR PLHLTSTGKLFLS+D+PKA+R+YATRTGLAGHNKNSITDL KLERELSMV
Sbjct: 132 QVVRAIGGRGPLHLTSTGKLFLSVDEPKAIRAYATRTGLAGHNKNSITDLGKLERELSMV 191

Query: 193 RALGYARDNEELELGVRCMAAGIRDDSGKLVAGLSISAPADRLQEDWVEDLVTTAAQISS 252
           R  GYARDNEELELGVRCMAAGI DDSGKLVAGLSISAPADRLQE+W+EDLV TAAQIS+
Sbjct: 192 RTRGYARDNEELELGVRCMAAGIHDDSGKLVAGLSISAPADRLQEEWLEDLVGTAAQISA 251

Query: 253 ALGF 256
            LG+
Sbjct: 252 TLGY 255


>A6SVX6.1 A6SVX6_JANMA Transcriptional regulator, IclR family
          Length = 258

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/249 (83%), Positives = 231/249 (92%)

Query: 8   ETGAISIQVIERMVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVKRFVDRSE 67
           +T   SIQVIERMV+LLDALA+YPDPVSLKELS+ T LHPSTAHRILNDLV+KRFVDRSE
Sbjct: 6   DTDKTSIQVIERMVALLDALALYPDPVSLKELSSVTGLHPSTAHRILNDLVIKRFVDRSE 65

Query: 68  PGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFS 127
           PGTYRLGMRLLELGNIVKSRL VREAALD MR LHRKT+QT+NLSVRQ+DEI+YIDR+FS
Sbjct: 66  PGTYRLGMRLLELGNIVKSRLDVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFS 125

Query: 128 ERSGMQVVRAIGGRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSITDLSKLER 187
           ERSGMQVVRA+GGRAPLHLTSTGKLFLSID+P+ V++YATRTGLAGHNKNSITDL KLE 
Sbjct: 126 ERSGMQVVRAVGGRAPLHLTSTGKLFLSIDEPRMVQAYATRTGLAGHNKNSITDLKKLEG 185

Query: 188 ELSMVRALGYARDNEELELGVRCMAAGIRDDSGKLVAGLSISAPADRLQEDWVEDLVTTA 247
           EL+ VR  GYARDNEELELGVRCMAAGI DD+G+L+AGLSISAPADRLQE+W+ DL+ TA
Sbjct: 186 ELNQVRLHGYARDNEELELGVRCMAAGIHDDTGRLIAGLSISAPADRLQEEWLADLMDTA 245

Query: 248 AQISSALGF 256
            QIS+ALG+
Sbjct: 246 KQISAALGY 254


>A4G3C1.1 A4G3C1_HERAR Putative transcriptional regulator (IclR family)
          Length = 245

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/237 (84%), Positives = 220/237 (92%)

Query: 20  MVSLLDALAMYPDPVSLKELSAATKLHPSTAHRILNDLVVKRFVDRSEPGTYRLGMRLLE 79
           MVSLLDALA YPDPVSLKELS  T LHPSTAHRILNDLV+KRFVDRSEPG YRLGMRLLE
Sbjct: 1   MVSLLDALATYPDPVSLKELSRVTGLHPSTAHRILNDLVLKRFVDRSEPGAYRLGMRLLE 60

Query: 80  LGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQSDEIVYIDRSFSERSGMQVVRAIG 139
           LGNIVKSRLSVREAALD MR LHRKT+QT+NLSVRQ+DEI+YIDR+FSERSGMQVVRAIG
Sbjct: 61  LGNIVKSRLSVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAIG 120

Query: 140 GRAPLHLTSTGKLFLSIDDPKAVRSYATRTGLAGHNKNSITDLSKLERELSMVRALGYAR 199
           GRAPLHLTSTGKLFLSID+PK V++YA RT L GHNKNSITDL++LE ELS+VRA GYAR
Sbjct: 121 GRAPLHLTSTGKLFLSIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYAR 180

Query: 200 DNEELELGVRCMAAGIRDDSGKLVAGLSISAPADRLQEDWVEDLVTTAAQISSALGF 256
           DNEELELGVRCMAAGI DD+GKL+AGLSISAPADRLQE+W+EDL+ TA +IS ALG+
Sbjct: 181 DNEELELGVRCMAAGIHDDTGKLIAGLSISAPADRLQEEWLEDLMRTAREISVALGY 237