BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0043.p         (85 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8NIN1.1 D8NIN1_RALSO Histone deacetylase EC=3.5.1.98                 130   5e-29
B2UFX5.1 B2UFX5_RALPJ Histone deacetylase superfamily                 130   9e-29
C6BIX4.1 C6BIX4_RALP1 Histone deacetylase superfamily                 129   2e-28
D8IQP2.1 D8IQP2_HERSS Deacetylase protein                             128   2e-28
Q1LP39.1 Q1LP39_RALME Histone deacetylase superfamily                 126   1e-27

>D8NIN1.1 D8NIN1_RALSO Histone deacetylase EC=3.5.1.98
          Length = 324

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%)

Query: 2   ARFDPQLIIYLAGADPHEGDRLGRMKLSMDGLAARDTLVFELGRQQRIPIAVTMAGGYGK 61
           ARF P+LIIYLAGADPHEGDRLGR+KL+MDGLA RD  VF+    QRIPIA+TMAGGYG 
Sbjct: 223 ARFAPRLIIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITMAGGYGN 282

Query: 62  NIEDTVAVHVQTITLASRYAADW 84
           NI+DTVAVH QTI LA+R+A  W
Sbjct: 283 NIDDTVAVHAQTIALAARHAVRW 305


>B2UFX5.1 B2UFX5_RALPJ Histone deacetylase superfamily
          Length = 334

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 69/82 (84%)

Query: 3   RFDPQLIIYLAGADPHEGDRLGRMKLSMDGLAARDTLVFELGRQQRIPIAVTMAGGYGKN 62
           RF PQLIIYLAGADPHEGDRLGR+KL++ GLA RD  VF+   Q+RIPIAVTMAGGYG N
Sbjct: 237 RFKPQLIIYLAGADPHEGDRLGRLKLTLQGLARRDQEVFDFAYQRRIPIAVTMAGGYGNN 296

Query: 63  IEDTVAVHVQTITLASRYAADW 84
           I+DTVAVH QTI LA+R+A  W
Sbjct: 297 IDDTVAVHAQTIALAARHAQRW 318


>C6BIX4.1 C6BIX4_RALP1 Histone deacetylase superfamily
          Length = 335

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 69/82 (84%)

Query: 3   RFDPQLIIYLAGADPHEGDRLGRMKLSMDGLAARDTLVFELGRQQRIPIAVTMAGGYGKN 62
           RF PQLIIYLAGADPHEGDRLGR+KL++ GLA RD  VF+   Q+RIP+AVTMAGGYG N
Sbjct: 237 RFKPQLIIYLAGADPHEGDRLGRLKLTLQGLARRDQEVFDFAYQRRIPVAVTMAGGYGNN 296

Query: 63  IEDTVAVHVQTITLASRYAADW 84
           I+DTVAVH QTI LA+R+A  W
Sbjct: 297 IDDTVAVHAQTIALAARHAQRW 318


>D8IQP2.1 D8IQP2_HERSS Deacetylase protein
          Length = 331

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 69/83 (83%)

Query: 3   RFDPQLIIYLAGADPHEGDRLGRMKLSMDGLAARDTLVFELGRQQRIPIAVTMAGGYGKN 62
           RF PQL+IYLAGADPHEGDRLG+MKLS+ GLAARD  VF   R+  IP+AVTMAGGYG+ 
Sbjct: 233 RFAPQLLIYLAGADPHEGDRLGKMKLSLAGLAARDQAVFSYAREHEIPVAVTMAGGYGRE 292

Query: 63  IEDTVAVHVQTITLASRYAADWN 85
           IE TVAVH+QTI LAS +AA W+
Sbjct: 293 IEQTVAVHLQTIRLASLHAARWS 315


>Q1LP39.1 Q1LP39_RALME Histone deacetylase superfamily
          Length = 323

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 68/82 (82%)

Query: 1   MARFDPQLIIYLAGADPHEGDRLGRMKLSMDGLAARDTLVFELGRQQRIPIAVTMAGGYG 60
            ARFDP L+IYLAGADPHEGDRLGR+KL+M GLA RD++VFE  R + +P+AV MAGGYG
Sbjct: 232 FARFDPDLLIYLAGADPHEGDRLGRLKLTMAGLAQRDSMVFEAARSRGLPVAVAMAGGYG 291

Query: 61  KNIEDTVAVHVQTITLASRYAA 82
             IEDTVAVH QTI LA+RY A
Sbjct: 292 NQIEDTVAVHTQTIMLAARYHA 313