BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0022.p         (239 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SVW0.1 A6SVW0_JANMA Electron transport complex protein RnfB         340   8e-92
A4G3A6.1 A4G3A6_HERAR Putative electron transport complex, ferre...   338   5e-91
D8IQM3.1 D8IQM3_HERSS Ferredoxin [4Fe-4S]-type protein                333   8e-90
F1W1F8.1 F1W1F8_9BURK Putative NADH:ubiquinone oxidoreductase, s...   303   1e-80
C0INR4.1 C0INR4_9BACT Iron-sulfur cluster-binding protein             289   3e-76

>A6SVW0.1 A6SVW0_JANMA Electron transport complex protein RnfB
          Length = 233

 Score =  340 bits (873), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 194/225 (86%)

Query: 1   VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60
           VS  +  +LADQ+E+LLPQTQC KCGYPACRPYAEAIADGSA YNQCPPGG EGVARLA 
Sbjct: 4   VSPPSQKSLADQLEDLLPQTQCTKCGYPACRPYAEAIADGSANYNQCPPGGIEGVARLAH 63

Query: 61  LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120
           LL +P++P+NP NG ERPR  AVIDE+ CIGCTLCIQACPVDAIVGAAKQMHT+  DLCT
Sbjct: 64  LLGKPVIPINPVNGHERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVNDLCT 123

Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180
           GCDLCVAPCPVDCIAMVEVTPG TGW AWSQ QAD ARARHDFR+ RL+REK END RLA
Sbjct: 124 GCDLCVAPCPVDCIAMVEVTPGKTGWDAWSQAQADDARARHDFRTQRLQREKEENDARLA 183

Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQA 225
           AKAAAKL+ V+A    +  EKAEQ RKKAIIQAAIERARLKKEQA
Sbjct: 184 AKAAAKLQAVQAETPASEEEKAEQARKKAIIQAAIERARLKKEQA 228


>A4G3A6.1 A4G3A6_HERAR Putative electron transport complex, ferredoxin
           subunit
          Length = 239

 Score =  338 bits (866), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 174/230 (75%), Positives = 197/230 (85%)

Query: 1   VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60
           VSS    +LADQ+E+LLPQTQC KCGYPACRPYAEA+ADG A YNQCPPGG EGVARLA+
Sbjct: 10  VSSPTEKSLADQLEDLLPQTQCTKCGYPACRPYAEAMADGRASYNQCPPGGIEGVARLAR 69

Query: 61  LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120
           +L + ++P+NP NG+ERPR  AVIDE+ CIGCTLCIQACPVDAIVGAAKQMHT+  DLCT
Sbjct: 70  VLGKKVIPINPVNGVERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVTDLCT 129

Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180
           GCDLCVAPCPVDCIAMVE TPG TGW AWSQ +ADAARARHDFR+ RL+REK EN+ RLA
Sbjct: 130 GCDLCVAPCPVDCIAMVEYTPGKTGWDAWSQAEADAARARHDFRTLRLQREKEENEARLA 189

Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAAVNDQ 230
           AKAAAKL+ +++   L+  EK EQ RKKAIIQAAIERARLKKEQA  +DQ
Sbjct: 190 AKAAAKLQALQSETPLSEEEKNEQARKKAIIQAAIERARLKKEQAEKDDQ 239


>D8IQM3.1 D8IQM3_HERSS Ferredoxin [4Fe-4S]-type protein
          Length = 240

 Score =  333 bits (855), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 181/231 (78%), Positives = 198/231 (85%), Gaps = 2/231 (0%)

Query: 1   VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60
           ++SSA  +LAD++E+LLPQTQC KCGYPACRPYAEAIA+G A YNQCPPGG EGVARLAQ
Sbjct: 6   ITSSA--SLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQ 63

Query: 61  LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120
           LL RP++PLNP +G E+PR  AVIDEA CIGCTLCIQACPVDAI GAAKQMHTV   LCT
Sbjct: 64  LLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCT 123

Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180
           GCDLCVAPCPVDCI+MVEVTPG TGWQAW QEQADAARARH +R+ RLRR+K END RLA
Sbjct: 124 GCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLA 183

Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAAVNDQP 231
           AKAAAKLKEVEAA A TP E+AE  RKKAIIQAA+ERARLKK QA     P
Sbjct: 184 AKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHP 234


>F1W1F8.1 F1W1F8_9BURK Putative NADH:ubiquinone oxidoreductase, subunit RnfB
          Length = 242

 Score =  303 bits (776), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/226 (73%), Positives = 190/226 (84%), Gaps = 1/226 (0%)

Query: 1   VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60
           VS   + +LAD+IE+ LPQTQC KCGY  CRPYAEAIADGSAG NQCPPGG EG+ RLA 
Sbjct: 14  VSHPVMKSLADRIEDALPQTQCTKCGYAGCRPYAEAIADGSAGINQCPPGGQEGIVRLAS 73

Query: 61  LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120
           LL RP++ LNP +G+ERPR  A+IDEA CIGCTLCIQACPVDAI+GA KQMHT+  DLCT
Sbjct: 74  LLDRPVIALNPVHGIERPRPVAIIDEALCIGCTLCIQACPVDAILGAPKQMHTILADLCT 133

Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180
           GCDLCVAPCPVDCIAMV VT   TGWQAW+++QAD ARARHDFR+ RL RE+R+ND RL 
Sbjct: 134 GCDLCVAPCPVDCIAMVAVT-TTTGWQAWTEQQADEARARHDFRAARLLRERRDNDARLL 192

Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAA 226
           AKAAAKLKEVE+A  L+ A+ AE+DRKKAIIQAAIERAR+K+E  A
Sbjct: 193 AKAAAKLKEVESAPTLSAADSAERDRKKAIIQAAIERARIKRETDA 238


>C0INR4.1 C0INR4_9BACT Iron-sulfur cluster-binding protein
          Length = 245

 Score =  289 bits (739), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/219 (71%), Positives = 178/219 (81%), Gaps = 1/219 (0%)

Query: 8   TLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQLLARPLL 67
           +LAD+IE++LPQTQC KCGY  CRPYAEAIA G+AG NQCPPGGAEG+ARL+ +  R ++
Sbjct: 6   SLADRIEDVLPQTQCTKCGYDGCRPYAEAIAAGAAGINQCPPGGAEGIARLSSVTGRKVI 65

Query: 68  PLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCTGCDLCVA 127
           PLNP NGLERPR  A IDE+ CIGCTLCIQACPVDAI+GAAK MHTV PDLCTGCDLCV 
Sbjct: 66  PLNPVNGLERPRAVAYIDESLCIGCTLCIQACPVDAIIGAAKLMHTVVPDLCTGCDLCVN 125

Query: 128 PCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLAAKAAAKL 187
           PCPVDCI M  VT   TGW AW Q  ADAAR RHDFR+FRL+REK END RLAAKA AK+
Sbjct: 126 PCPVDCIVMHPVTE-TTGWNAWRQADADAARERHDFRAFRLKREKDENDARLAAKAEAKM 184

Query: 188 KEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAA 226
             V A D    A +AE++RK+AII AA+ERARLKKE+AA
Sbjct: 185 AAVHALDPADAAGEAEKERKRAIIAAAMERARLKKEEAA 223