BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0021.p         (226 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQM2.1 D8IQM2_HERSS Endonuclease III protein EC=4.2.99.18           367   e-99 
A6SVV9.1 A6SVV9_JANMA DNA-(Apurinic or apyrimidinic site) lyase ...   344   5e-93
A4G3A5.1 A4G3A5_HERAR Endonuclease III (DNA-(Apurinic or apyrimi...   336   2e-90
F1W1F9.1 F1W1F9_9BURK Endonuclease III                                324   4e-87
E1VPT1.1 E1VPT1_9GAMM Endonuclease III                                315   2e-84

>D8IQM2.1 D8IQM2_HERSS Endonuclease III protein EC=4.2.99.18
          Length = 216

 Score =  367 bits (941), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 174/193 (90%), Positives = 186/193 (96%)

Query: 1   MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN  KRREIF RLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT
Sbjct: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60

Query: 61  PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120
           P AIY++GVD+L+PYIQTIGL+RTKAKNVIETCRIL+E+HGG+VPE+RE LEALPGVGRK
Sbjct: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK 120

Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180
           TANVV+NTAFGHPTIAVDTHIFRVSNRTG+APGKDVDEVERKL+KFVAPEF QDAHHWLI
Sbjct: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180

Query: 181 LHGRYTCIARKPH 193
           LHGRYTCIARKP 
Sbjct: 181 LHGRYTCIARKPQ 193


>A6SVV9.1 A6SVV9_JANMA DNA-(Apurinic or apyrimidinic site) lyase EC=4.2.99.18
          Length = 216

 Score =  344 bits (883), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/192 (86%), Positives = 176/192 (91%)

Query: 1   MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN+EKRREIF+RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T
Sbjct: 1   MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60

Query: 61  PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120
           P  IY LGVD LIPYIQTIGL+RTKAKNVIETCRIL+ +HGGEVP TREELEALPGVGRK
Sbjct: 61  PKKIYALGVDGLIPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTREELEALPGVGRK 120

Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180
           TANVVMNTAFG  TIAVDTHIFRVSNRTG+APGK+VD VE+KLMKFVAPEF QDAHHWLI
Sbjct: 121 TANVVMNTAFGEATIAVDTHIFRVSNRTGLAPGKNVDIVEQKLMKFVAPEFQQDAHHWLI 180

Query: 181 LHGRYTCIARKP 192
           LHGRYTCIAR P
Sbjct: 181 LHGRYTCIARTP 192


>A4G3A5.1 A4G3A5_HERAR Endonuclease III (DNA-(Apurinic or apyrimidinic site)
           lyase) EC=4.2.99.18
          Length = 216

 Score =  336 bits (861), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/192 (84%), Positives = 174/192 (90%)

Query: 1   MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN+EKRREIF+RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T
Sbjct: 1   MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60

Query: 61  PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120
           P  IY LGV+ L+PYIQTIGL+RTKAKNVIETCRIL+ +HGGEVP TR  LEALPGVGRK
Sbjct: 61  PRKIYALGVEGLMPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTRAALEALPGVGRK 120

Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180
           TANVVMNTAFG PTIAVDTHIFRV+NRTGIAPGK+VD VE+KLMKFVAPEF  DAHHWLI
Sbjct: 121 TANVVMNTAFGEPTIAVDTHIFRVANRTGIAPGKNVDIVEQKLMKFVAPEFRHDAHHWLI 180

Query: 181 LHGRYTCIARKP 192
           LHGRYTCIAR P
Sbjct: 181 LHGRYTCIARTP 192


>F1W1F9.1 F1W1F9_9BURK Endonuclease III
          Length = 216

 Score =  324 bits (831), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/193 (79%), Positives = 169/193 (87%)

Query: 1   MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN+EKRR IF R + ANP P TEL Y+TPFELLIAVLLSAQATDV+VNKATRKL+P+A+T
Sbjct: 1   MNAEKRRLIFERWQAANPNPATELAYSTPFELLIAVLLSAQATDVAVNKATRKLFPMAST 60

Query: 61  PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120
           PAAIY LGVD LIPYIQTIGLFR KAKN IETCR++L +HGG++P  R  LEALPGVGRK
Sbjct: 61  PAAIYALGVDGLIPYIQTIGLFRNKAKNTIETCRLILTEHGGQIPRDRAGLEALPGVGRK 120

Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180
           TANVV+NTAFG PTIAVDTHIFRV NRTG+APGKDVD VE KLMKFV  EFLQDAHHW+I
Sbjct: 121 TANVVLNTAFGEPTIAVDTHIFRVGNRTGLAPGKDVDVVEHKLMKFVPREFLQDAHHWMI 180

Query: 181 LHGRYTCIARKPH 193
           LHGRYTC+AR P 
Sbjct: 181 LHGRYTCMARSPQ 193


>E1VPT1.1 E1VPT1_9GAMM Endonuclease III
          Length = 218

 Score =  315 bits (808), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/193 (76%), Positives = 169/193 (87%)

Query: 1   MNSEKRREIFSRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN+ KRREIF R + ANP PTTELEY +PFELLIAV+LSAQATDVSVNKATRKL+PVANT
Sbjct: 1   MNATKRREIFQRFQAANPHPTTELEYNSPFELLIAVILSAQATDVSVNKATRKLFPVANT 60

Query: 61  PAAIYKLGVDELIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPETREELEALPGVGRK 120
           P +++ LGVD L  YI+TIGLF +KA+N+I+TC ILLE H  EVP +RE LEALPGVGRK
Sbjct: 61  PESLFALGVDGLKAYIKTIGLFNSKAENIIKTCAILLEHHNAEVPNSREALEALPGVGRK 120

Query: 121 TANVVMNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFVAPEFLQDAHHWLI 180
           TANVV+NTAFG PT+AVDTHIFRV+NRTGIAPGK V EVE KL++++  EFLQDAHHWLI
Sbjct: 121 TANVVLNTAFGQPTMAVDTHIFRVANRTGIAPGKTVLEVENKLLRYIPKEFLQDAHHWLI 180

Query: 181 LHGRYTCIARKPH 193
           LHGRYTCIARKPH
Sbjct: 181 LHGRYTCIARKPH 193