BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0016.p         (121 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G3A0.1 A4G3A0_HERAR Putative Site-specific recombinase Gcr          155   2e-36
A6SVV4.1 A6SVV4_JANMA Site-specific recombinase transmembrane pr...   118   3e-25
D6CP35.1 D6CP35_THIS3 Putative site-specific recombinase Gcr          100   1e-19
D5X023.1 D5X023_THIK1 Site-specific recombinase Gcr                    98   5e-19
C5T0S3.1 C5T0S3_ACIDE Putative site-specific recombinase transme...    98   5e-19

>A4G3A0.1 A4G3A0_HERAR Putative Site-specific recombinase Gcr
          Length = 715

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 93/120 (77%)

Query: 1   MAPVVAEFFGLPLDVRHVTLATGTLVAAGASLGWDIVTTPAFWLAVSGIVLIGALNVGIA 60
           M PV+A+FFGLPLDVRHVTL+T TL AA ++LGW++   P FWLA +GIV IG LNVG+A
Sbjct: 583 MMPVMAQFFGLPLDVRHVTLSTATLTAAVSTLGWEVFAMPQFWLACAGIVAIGVLNVGVA 642

Query: 61  FLCAMALALRAREIPARIRRVVFRAVLRRFAASPWTFLFPEKAASTAVKPVPSESKVEEE 120
           F CA+ALALRAR++P R+RR+VFRAVLRRF  +P+ F +P +  +TA  P   E +V EE
Sbjct: 643 FSCALALALRARDVPGRVRRLVFRAVLRRFTLTPYVFFWPVQTENTAAAPAVEEGEVLEE 702


>A6SVV4.1 A6SVV4_JANMA Site-specific recombinase transmembrane protein
          Length = 712

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 91/122 (74%), Gaps = 3/122 (2%)

Query: 1   MAPVVAEFFGLPLDVRHVTLATGTLVAAGASLGWDIVTTPAFWLAVSGIVLIGALNVGIA 60
           M PV+A FFGLPLDVRHVTL+T TL AA ++LGW+++ TP FWLA  GI  IG LNVG+A
Sbjct: 583 MVPVIAHFFGLPLDVRHVTLSTATLAAAVSTLGWEVMATPQFWLACVGIAAIGLLNVGVA 642

Query: 61  FLCAMALALRAREIPARIRRVVFRAVLRRFAASPWTFLF---PEKAASTAVKPVPSESKV 117
           F CA+ALALRAR++P R+RR+VFRA+LRRF  +P+ F +   PE AA  A    P+E   
Sbjct: 643 FACALALALRARDVPKRVRRLVFRAMLRRFTLTPYIFFWPMQPEAAAPAAQLENPAEKDE 702

Query: 118 EE 119
           E+
Sbjct: 703 EQ 704


>D6CP35.1 D6CP35_THIS3 Putative site-specific recombinase Gcr
          Length = 707

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 69/109 (63%)

Query: 1   MAPVVAEFFGLPLDVRHVTLATGTLVAAGASLGWDIVTTPAFWLAVSGIVLIGALNVGIA 60
           + P     FGL L VRHVTL++G   AA ASLG  +V  PAFW A++GI + G LNVG++
Sbjct: 598 LTPEFFRIFGLDLQVRHVTLSSGLFGAACASLGPAVVNDPAFWWALAGIAVNGVLNVGVS 657

Query: 61  FLCAMALALRAREIPARIRRVVFRAVLRRFAASPWTFLFPEKAASTAVK 109
           F  A  LALRAR I  + RR ++ ++ RR    PWTF+ P + A+ +V 
Sbjct: 658 FYLAYRLALRARGIQVKERRAIYTSIARRLWRRPWTFILPPRHAAASVH 706


>D5X023.1 D5X023_THIK1 Site-specific recombinase Gcr
          Length = 707

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 68/109 (62%)

Query: 1   MAPVVAEFFGLPLDVRHVTLATGTLVAAGASLGWDIVTTPAFWLAVSGIVLIGALNVGIA 60
           + P     FGL L VRHVTL++G   AA ASLG  +V  PAFW A++GI + G LNVG++
Sbjct: 598 LTPEFFRIFGLDLQVRHVTLSSGLFGAACASLGPAVVNDPAFWWALAGIAVNGVLNVGVS 657

Query: 61  FLCAMALALRAREIPARIRRVVFRAVLRRFAASPWTFLFPEKAASTAVK 109
           F  A  LALRAR I  + RR ++ ++ RR    PWTF+ P + A+ +  
Sbjct: 658 FYLAYRLALRARGIQVKERRAIYTSIARRLWRRPWTFILPPRHAAASAH 706


>C5T0S3.1 C5T0S3_ACIDE Putative site-specific recombinase transmembrane
           protein
          Length = 659

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 69/105 (65%)

Query: 1   MAPVVAEFFGLPLDVRHVTLATGTLVAAGASLGWDIVTTPAFWLAVSGIVLIGALNVGIA 60
           + P  A FFGL LDVRHVTL++G + AA ASLGW I+   AFW AV+ + L+GALNVG++
Sbjct: 555 LVPAFAGFFGLGLDVRHVTLSSGQIGAATASLGWSILHLGAFWWAVATLPLLGALNVGVS 614

Query: 61  FLCAMALALRAREIPARIRRVVFRAVLRRFAASPWTFLFPEKAAS 105
           F  A  LALRA ++    R  ++ A+ RR   +P +F  P + AS
Sbjct: 615 FYLAFRLALRAHDVSGVDRSRIYAAMRRRVRNAPLSFFLPARQAS 659