BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0015.p         (115 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SVV4.1 A6SVV4_JANMA Site-specific recombinase transmembrane pr...   123   7e-27
D8IQ81.1 D8IQ81_HERSS Site-specific recombinase transmembrane pr...   114   4e-24
A4G3A0.1 A4G3A0_HERAR Putative Site-specific recombinase Gcr          111   4e-23
Q1LPL7.1 Q1LPL7_RALME Site-specific recombinase Gcr                   105   3e-21
Q8Y0N1.1 Q8Y0N1_RALSO Putative site-specific recombinase transme...   102   2e-20

>A6SVV4.1 A6SVV4_JANMA Site-specific recombinase transmembrane protein
          Length = 712

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 79/102 (77%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           LR L+ + A LLRSQAAA+FGNL+AV P ++ ++  FL  +G  +M  +KA AA+ SLS 
Sbjct: 445 LRELLAKIAALLRSQAAAVFGNLLAVAPVIVALSFAFLFITGKPVMNADKAHAAIASLSF 504

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
           VG  PL+AA TGILLWL+SL +GFADNWFALRRL+E++AH R
Sbjct: 505 VGVTPLFAAFTGILLWLASLISGFADNWFALRRLKESIAHHR 546


>D8IQ81.1 D8IQ81_HERSS Site-specific recombinase transmembrane protein
          Length = 738

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 80/119 (67%), Gaps = 6/119 (5%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           +R LI E+  LLRSQ+A IFGNL+AV+P    + A    A     M+ E AR ++ SLSL
Sbjct: 449 MRDLIAESGRLLRSQSAGIFGNLLAVVPVTAALCALGWFALDRRPMSLEAARQSVASLSL 508

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQRP------DLXWASCSAW 113
           VGP PLYAALTG+LLWL+SL AGFADNWFALRR+RE +++ R        L    C+AW
Sbjct: 509 VGPTPLYAALTGVLLWLASLVAGFADNWFALRRVREVVSNHRRLVHGLGALRAQRCAAW 567


>A4G3A0.1 A4G3A0_HERAR Putative Site-specific recombinase Gcr
          Length = 715

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 77/102 (75%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           LR L+   A LLRSQAAA+FGNL+AV P ++ ++   +L     LM+ +KA + + SLSL
Sbjct: 445 LRELLARIAALLRSQAAAVFGNLLAVAPVVVALSLAVVLMFDKPLMSADKAHSTIASLSL 504

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
           VG  PLYAA TG+LLWL+SL AGFADNWFALRR++E++AH R
Sbjct: 505 VGVTPLYAAFTGLLLWLASLMAGFADNWFALRRVKESIAHHR 546


>Q1LPL7.1 Q1LPL7_RALME Site-specific recombinase Gcr
          Length = 703

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 4   LIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSLVGP 63
            + +T  ++RS AAAIFGNL  V P  L +  G   A GA L+TP KA A + S S++GP
Sbjct: 454 FVDDTIAMIRSNAAAIFGNLSVVFPVALAIEWGVGKAFGAHLLTPAKAIATIESFSILGP 513

Query: 64  APLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
            PLYA  TG+LLWLSSL AG+ADNWFAL R+ + +A+ R
Sbjct: 514 TPLYAIFTGVLLWLSSLIAGWADNWFALHRVHDVMAYNR 552


>Q8Y0N1.1 Q8Y0N1_RALSO Putative site-specific recombinase transmembrane
           protein
          Length = 696

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 70/101 (69%), Gaps = 4/101 (3%)

Query: 4   LIGETAMLLRSQAAAIFGNLIAVIPTMLLM--TAGFLLASGATLMTPEKARAALHSLSLV 61
            + +T  ++RS AAAI GNL+AV P   L+   AG +    A L++P KA A + S S++
Sbjct: 447 FVDDTVAMIRSNAAAIAGNLVAVAPVAFLVQWVAGRVFH--ADLISPAKAAATIESFSVL 504

Query: 62  GPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
           GP PLYA  TG+LLWLSSLAAG+ADNWFAL R+ + +AH R
Sbjct: 505 GPTPLYAVFTGVLLWLSSLAAGWADNWFALHRVHDVIAHHR 545