BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0004.p         (150 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQ72.1 D8IQ72_HERSS Pb-specific transcription regulator protein     232   2e-59
A4G5J0.1 A4G5J0_HERAR Transcriptional regulator (CadR)                220   5e-56
A6SYZ0.1 A6SYZ0_JANMA Transcriptional regulator, MerR family          214   3e-54
C5CTJ2.1 C5CTJ2_VARPS Transcriptional regulator, MerR family          187   4e-46
A4G5B9.1 A4G5B9_HERAR Cd(II)/Pb(II)-responsive transcriptional r...   186   7e-46

>D8IQ72.1 D8IQ72_HERSS Pb-specific transcription regulator protein
          Length = 150

 Score =  232 bits (591), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 134/150 (89%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           MD LKIGELAA+ DCPVET+RYYE+EALLP PTRSQ NYRLYG+RHVERLQFIRHCRSLD
Sbjct: 1   MDTLKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLD 60

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
           MTLDEVR LL+ RDAPE++CG VNALLDKHIGHVA+RIA+L+ LQAQL+ LRAQC+ AQ 
Sbjct: 61  MTLDEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQP 120

Query: 121 TRDCGILQGLANMSDDSKPVNLGSHGSGCH 150
            RDCGILQGLA++ DD KP NLGSHG GCH
Sbjct: 121 ARDCGILQGLASLPDDLKPANLGSHGGGCH 150


>A4G5J0.1 A4G5J0_HERAR Transcriptional regulator (CadR)
          Length = 151

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 121/150 (80%), Gaps = 1/150 (0%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           +  LKIGELAA+T   VETIRYYE++ LLP P RS GNYR+YG+ HV+RLQFIRHCRSLD
Sbjct: 3   LQILKIGELAAQTGSSVETIRYYEQQNLLPQPARSAGNYRIYGEAHVKRLQFIRHCRSLD 62

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
           MTLDE+R+LL FRD PEENC  VN LLDKHIGHVA RI ELK LQ QL+ LR++C T Q+
Sbjct: 63  MTLDEIRTLLNFRDTPEENCAGVNTLLDKHIGHVADRIRELKALQVQLQELRSRCLTVQS 122

Query: 121 TRDCGILQGLANMSDDSKPVNLGSHGSGCH 150
           T+ CGILQGLAN +DD  P NLGSH  GCH
Sbjct: 123 TQACGILQGLAN-ADDIDPRNLGSHSGGCH 151


>A6SYZ0.1 A6SYZ0_JANMA Transcriptional regulator, MerR family
          Length = 151

 Score =  214 bits (545), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 117/150 (78%), Gaps = 1/150 (0%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           + ALKIGELA +T   VETIRYYE++ LLP   RS  NYRLYGD HV RLQFIRHCRSLD
Sbjct: 3   LQALKIGELALQTGSSVETIRYYEQQNLLPQAMRSSSNYRLYGDEHVRRLQFIRHCRSLD 62

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
           MTLDE+R+LL FRD PEENC  VN LLDKHI HV+ RI ELK LQ +LK LR++C T Q 
Sbjct: 63  MTLDEIRTLLSFRDTPEENCAGVNTLLDKHIEHVSHRIKELKALQTELKQLRSRCLTTQT 122

Query: 121 TRDCGILQGLANMSDDSKPVNLGSHGSGCH 150
             +CGILQGLAN ++DS+P  LG+HG GCH
Sbjct: 123 VEECGILQGLAN-AEDSEPKKLGTHGGGCH 151


>C5CTJ2.1 C5CTJ2_VARPS Transcriptional regulator, MerR family
          Length = 157

 Score =  187 bits (475), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)

Query: 4   LKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMTL 63
           +KIG+LA   + PVETIRYYERE LLPAP R++GNYR+Y D H +RL FIR CRSLDMTL
Sbjct: 1   MKIGDLAKAANTPVETIRYYEREQLLPAPARTEGNYRIYDDEHAQRLGFIRRCRSLDMTL 60

Query: 64  DEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQATRD 123
           DE+R+LL+FRDAP E+CGEVN LLD HIGHVA RI ELK L+ QLK+LR QC   ++ R+
Sbjct: 61  DEIRNLLRFRDAPGEDCGEVNQLLDDHIGHVAARIRELKTLEKQLKALRQQCCGPESARN 120

Query: 124 CGILQGLANMSDDSKPVNLGSHGSGCH 150
           CGILQ L   +  ++P   G H    H
Sbjct: 121 CGILQELDTAAPAAEP--FGQHAGHVH 145


>A4G5B9.1 A4G5B9_HERAR Cd(II)/Pb(II)-responsive transcriptional regulator
          Length = 145

 Score =  186 bits (473), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 102/130 (78%)

Query: 2   DALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDM 61
           + LKIGELA    C + TIRYYE+E LL AP R++ NYR+YG  HVERL  IRHCRSLDM
Sbjct: 4   EKLKIGELAKHAHCQIATIRYYEQEGLLSAPARNEANYRIYGREHVERLSLIRHCRSLDM 63

Query: 62  TLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQAT 121
           TL+E+R+LL+FRDAPE+NCGEVN LLD HIGHVAQRIA LK L+ QLK LR  C+T +  
Sbjct: 64  TLNEIRTLLRFRDAPEDNCGEVNTLLDAHIGHVAQRIASLKALEKQLKELRQLCNTTRTA 123

Query: 122 RDCGILQGLA 131
           ++CGIL  LA
Sbjct: 124 KNCGILNDLA 133