BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0023.p         (201 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1W4C6.1 F1W4C6_9BURK Clustered with transcription termination p...   255   2e-66
D8IQH2.1 D8IQH2_HERSS Ribosome maturation factor rimP                 254   4e-66
A6T0Z0.2 RIMP_JANMA Ribosome maturation factor rimP                   254   6e-66
A4G7S9.2 RIMP_HERAR Ribosome maturation factor rimP                   251   6e-65
C6U0F7.1 C6U0F7_BURPS Ribosome maturation factor rimP                 211   7e-53

>F1W4C6.1 F1W4C6_9BURK Clustered with transcription termination protein NusA
          Length = 161

 Score =  255 bits (652), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/162 (77%), Positives = 142/162 (87%), Gaps = 1/162 (0%)

Query: 40  LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99
           +QLL+LIE T+ GM YELVD E+A RGL+RV+IDFP   A++G ITVEDCEKVTHQLLHV
Sbjct: 1   MQLLELIEKTVVGMEYELVDFEQAARGLLRVYIDFPPEQAERGMITVEDCEKVTHQLLHV 60

Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159
            TVEN  YERLEVSSPGLDRPLKKL+DY+RFA  EAIVKLRMPMPGAANRK+FQGIL AP
Sbjct: 61  LTVENAVYERLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGILHAP 120

Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201
           EG+ +KLEFE  +GS A+L+FTLADVDKA LVPKVDFRSRKA
Sbjct: 121 EGDQIKLEFEGKEGS-AMLEFTLADVDKAHLVPKVDFRSRKA 161


>D8IQH2.1 D8IQH2_HERSS Ribosome maturation factor rimP
          Length = 164

 Score =  254 bits (649), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 146/164 (89%), Gaps = 2/164 (1%)

Query: 40  LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPF-ADADKG-PITVEDCEKVTHQLL 97
           +QLL+LIE+TLSG+GYELV+ EKA RGLVRVFIDFPF  +A++   ITVEDCEK THQLL
Sbjct: 1   MQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60

Query: 98  HVFTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILR 157
           HVFTVENV YERLEVSSPGLDRPLKK SD+VRF D EA++KLR+P+PG +NRKT++G+LR
Sbjct: 61  HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120

Query: 158 APEGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201
            PEGE L LEFEANDGSAA+L+FTLADVDKA LVP+VDFRSRK 
Sbjct: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164


>A6T0Z0.2 RIMP_JANMA Ribosome maturation factor rimP
          Length = 161

 Score =  254 bits (648), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 138/162 (85%), Gaps = 1/162 (0%)

Query: 40  LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99
           +QL  LIE T+ GMGYELV+ E+A RGLVRVFIDF   DADKG ITVEDCEKVTHQLLHV
Sbjct: 1   MQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLHV 60

Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159
            TVEN NYERLEVSSPGLDRPLKKLSDYVRFA  EA+VKLRMPMP AANRK+FQGIL+ P
Sbjct: 61  LTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQEP 120

Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201
            GE L LEFE NDG A  L+FTLADVDKA LVP+V+FRSRKA
Sbjct: 121 VGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161


>A4G7S9.2 RIMP_HERAR Ribosome maturation factor rimP
          Length = 161

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 138/162 (85%), Gaps = 1/162 (0%)

Query: 40  LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99
           +QL  LIE T+ GMGYELV+ E+A RGLVRV+IDF   DADKG ITVEDCEKVTHQLLHV
Sbjct: 1   MQLSALIEKTVVGMGYELVNFEQAARGLVRVYIDFTPEDADKGSITVEDCEKVTHQLLHV 60

Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159
            TVEN NYERLEVSSPGLDRPLKKLSDYVRFA  EA+VKLR+PMP AANRK+FQGIL+ P
Sbjct: 61  LTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGILQEP 120

Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201
            GE L LEFE N+G A  L+FTLADVDKA LVP+V+FRSRKA
Sbjct: 121 VGETLALEFEGNEGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161


>C6U0F7.1 C6U0F7_BURPS Ribosome maturation factor rimP
          Length = 153

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 127/161 (78%), Gaps = 9/161 (5%)

Query: 40  LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99
           +QL +LIETT++G+GYELVDLE+  RG+V V+ID P        IT++DCEKVT QL HV
Sbjct: 1   MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPAG------ITIDDCEKVTRQLQHV 54

Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159
            TVEN++YERLEVSSPGLDRPLKKL+D+ RFA  EA++ L+ P+ G   RKT++GIL AP
Sbjct: 55  LTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDG---RKTYRGILHAP 111

Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRK 200
            GE + LEFE   G AA+LDFTLADVDKARL+P VDFRSRK
Sbjct: 112 NGETIGLEFERKKGEAAMLDFTLADVDKARLIPHVDFRSRK 152