BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0019.p         (129 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQG9.1 D8IQG9_HERSS Ribosome-binding factor A                       234   4e-60
A4G7S6.1 RBFA_HERAR Ribosome-binding factor A                         231   2e-59
A6T0Y7.1 RBFA_JANMA Ribosome-binding factor A                         229   1e-58
F1VXY6.1 F1VXY6_9BURK Ribosome-binding factor A                       221   4e-56
C3X4B7.1 C3X4B7_OXAFO Ribosome-binding factor A                       177   6e-43

>D8IQG9.1 D8IQG9_HERSS Ribosome-binding factor A
          Length = 130

 Score =  234 bits (596), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 122/128 (95%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMVTITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSE+IAFELKDPRVGM+TITEVQVTPDYAHAKVFFTTL
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60

Query: 61  KDDKQAIQDTVTGLSKAAGFLRGQLGRRLTIHTLPDLHFVHDNSTARGIEMSRLIDEANA 120
            D+ +AI++T+ GL KA G+LR QLGRRLTIHTLP+LHFVHDNSTARGIEMSRLIDEANA
Sbjct: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120

Query: 121 TRAKDADE 128
           TRAKD+D+
Sbjct: 121 TRAKDSDD 128


>A4G7S6.1 RBFA_HERAR Ribosome-binding factor A
          Length = 128

 Score =  231 bits (590), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 122/128 (95%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMVTITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSEI+AFELKDPRVGM+TITEVQVTPDYAHAKVFFT L
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSEIVAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60

Query: 61  KDDKQAIQDTVTGLSKAAGFLRGQLGRRLTIHTLPDLHFVHDNSTARGIEMSRLIDEANA 120
            D+K  I++TV+GLS A+G++RGQLGRRL+IHTLP+LHFVHD STARGIEMS+LIDEANA
Sbjct: 61  SDNKDEIKNTVSGLSAASGYIRGQLGRRLSIHTLPELHFVHDTSTARGIEMSKLIDEANA 120

Query: 121 TRAKDADE 128
           TRAKDA++
Sbjct: 121 TRAKDAED 128


>A6T0Y7.1 RBFA_JANMA Ribosome-binding factor A
          Length = 128

 Score =  229 bits (583), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 121/128 (94%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMVTITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGM+TITEVQVTPDYAHAKVFFT L
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60

Query: 61  KDDKQAIQDTVTGLSKAAGFLRGQLGRRLTIHTLPDLHFVHDNSTARGIEMSRLIDEANA 120
            D K  I++TV+GL+ A+G++RGQLGRRLTIHTLP+LHFVHD STARGIEMS+LIDEANA
Sbjct: 61  SDKKDDIKNTVSGLTAASGYIRGQLGRRLTIHTLPELHFVHDTSTARGIEMSKLIDEANA 120

Query: 121 TRAKDADE 128
           +RAKDA++
Sbjct: 121 SRAKDAED 128


>F1VXY6.1 F1VXY6_9BURK Ribosome-binding factor A
          Length = 129

 Score =  221 bits (562), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 121/129 (93%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMVTITEVQVTPDYAHAKVFFTTL 60
           MAKHSK+IP RG+RVADQIQRDL+EI+A+ELKDPRVGM+T+TEVQ+TPDYAHAKVFFT L
Sbjct: 1   MAKHSKTIPVRGIRVADQIQRDLAEIVAYELKDPRVGMITVTEVQLTPDYAHAKVFFTML 60

Query: 61  KDDKQAIQDTVTGLSKAAGFLRGQLGRRLTIHTLPDLHFVHDNSTARGIEMSRLIDEANA 120
            DDK+AI++TVTGL  A+GF+RGQLGRRL +HTLP+LHFVHD STARG+E+S+LIDEANA
Sbjct: 61  SDDKEAIKNTVTGLKIASGFIRGQLGRRLHVHTLPELHFVHDTSTARGMELSKLIDEANA 120

Query: 121 TRAKDADES 129
           TRAKD D++
Sbjct: 121 TRAKDDDQA 129


>C3X4B7.1 C3X4B7_OXAFO Ribosome-binding factor A
          Length = 129

 Score =  177 bits (448), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 102/127 (80%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMVTITEVQVTPDYAHAKVFFTTL 60
           MA+HSKSIPGR LRVADQIQRDLS+II  ELKDP VGMVTITEV+VTPDYA+A+V+FT L
Sbjct: 1   MARHSKSIPGRSLRVADQIQRDLSDIIFSELKDPNVGMVTITEVKVTPDYANARVYFTML 60

Query: 61  KDDKQAIQDTVTGLSKAAGFLRGQLGRRLTIHTLPDLHFVHDNSTARGIEMSRLIDEANA 120
            D  + ++ T+  L  A+GF+R QLG+RL IHTLP L F++DNS A G+ +S LID ANA
Sbjct: 61  DDKPETVKKTLDSLQHASGFIRMQLGKRLHIHTLPQLAFIYDNSIAEGVALSHLIDVANA 120

Query: 121 TRAKDAD 127
            RAKD D
Sbjct: 121 ERAKDGD 127