BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0012.p         (155 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T0I1.1 A6T0I1_JANMA N utilization substance protein B homolog       270   4e-71
A4G3Y1.1 A4G3Y1_HERAR N utilization substance protein B homolog       267   4e-70
D8IQF1.1 D8IQF1_HERSS N utilization substance protein B homolog       265   1e-69
F1VWR0.1 F1VWR0_9BURK Transcription termination protein NusB          259   1e-67
C3X5P8.1 C3X5P8_OXAFO N utilization substance protein B homolog       231   3e-59

>A6T0I1.1 A6T0I1_JANMA N utilization substance protein B homolog
          Length = 156

 Score =  270 bits (691), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 138/155 (89%)

Query: 1   MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60
           MT K  HANPSKNRTPRHRAREFALQGLYQWLLNNED   IE HIR+AHGFDKADAEHFD
Sbjct: 1   MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVIETHIRQAHGFDKADAEHFD 60

Query: 61  VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120
            LLYG +KQ  ELR  LAPLIDR I+ LSPVEHAALLIGAFELKN++EIPY+VVINEAVE
Sbjct: 61  ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120

Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGRR 155
           LTKSFGGIDGHKYVNGVLD+FA  AREVE++AGR+
Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAVSAREVEINAGRK 155


>A4G3Y1.1 A4G3Y1_HERAR N utilization substance protein B homolog
          Length = 156

 Score =  267 bits (683), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 137/155 (88%)

Query: 1   MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60
           MT K  HANPSKNRTPRHRAREFALQGLYQWLLNNED   IE HIR+AHGFDKADAEHFD
Sbjct: 1   MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTIENHIRQAHGFDKADAEHFD 60

Query: 61  VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120
            LLYG +KQ  ELR  LAPLIDR I+ LSPVEHAALLIGAFELKN++EIPY+VVINEAVE
Sbjct: 61  ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120

Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGRR 155
           LTKSFGGIDGHKYVNGVLD+FAA  RE E+SAGR+
Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAGVREPEISAGRK 155


>D8IQF1.1 D8IQF1_HERSS N utilization substance protein B homolog
          Length = 156

 Score =  265 bits (678), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 1   MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60
           M+NK QHAN +KNRTPRHRAREFALQGLYQWLLN+EDAGAIEAHIREAHGFDKADAEHFD
Sbjct: 1   MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60

Query: 61  VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120
            LL GAI+ A +LR  LAPLIDR I ELSPVEHAALLIGA+EL+N++EIPY+VVINEAVE
Sbjct: 61  TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120

Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEV-SAGRR 155
           LTKSFGGIDGHKYVNGVLDRFAA+ R  EV +AGRR
Sbjct: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156


>F1VWR0.1 F1VWR0_9BURK Transcription termination protein NusB
          Length = 157

 Score =  259 bits (661), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/149 (79%), Positives = 137/149 (91%)

Query: 7   HANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDVLLYGA 66
           HANP+K+RTPRHR+REFALQGLYQWLLNNEDAG IEAH+REAHGFDKADA HFD LLYG 
Sbjct: 8   HANPNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEAHLREAHGFDKADAVHFDALLYGT 67

Query: 67  IKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVELTKSFG 126
           IKQA  LRTDL PLIDR +++LSP+EHA LLIGA+ELKN++EIPY+V+INE+VEL KSFG
Sbjct: 68  IKQADALRTDLLPLIDRPLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVELAKSFG 127

Query: 127 GIDGHKYVNGVLDRFAAKAREVEVSAGRR 155
           GIDGHKYVNGVLD+FAAK REVE++A R+
Sbjct: 128 GIDGHKYVNGVLDKFAAKTREVEIAASRQ 156


>C3X5P8.1 C3X5P8_OXAFO N utilization substance protein B homolog
          Length = 159

 Score =  231 bits (589), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 127/154 (82%)

Query: 1   MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60
           M NK  HANPSKNR+PRHR+REFALQGLY+WLLN +DA  I  HIR+AHGFDKAD  HF 
Sbjct: 4   MKNKSVHANPSKNRSPRHRSREFALQGLYEWLLNKDDAPVIIEHIRQAHGFDKADTGHFV 63

Query: 61  VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120
            L+ G I QA  LR+++ P IDRS+ ELSPVEHA LL+GA+ELKN++EIPYRVVINEAVE
Sbjct: 64  TLVSGTIHQAETLRSEIVPHIDRSLDELSPVEHAILLLGAYELKNHIEIPYRVVINEAVE 123

Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGR 154
           LTKSFGGIDGHK+VNGVLD+ AAK R  EV A R
Sbjct: 124 LTKSFGGIDGHKFVNGVLDKIAAKLRPAEVEADR 157