BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0007.p         (85 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWG2.1 D8IWG2_HERSS Cation/multidrug efflux pump protein            150   9e-35
E6UX88.1 E6UX88_VARPD Acriflavin resistance protein                   147   5e-34
A1WES8.1 A1WES8_VEREI Acriflavin resistance protein                   135   2e-30
Q1LQU0.1 Q1LQU0_RALME Multidrug efflux system, subunit B              132   1e-29
Q89NE0.1 Q89NE0_BRAJA AcrB/AcrD/AcrF family protein                   102   2e-20

>D8IWG2.1 D8IWG2_HERSS Cation/multidrug efflux pump protein
          Length = 1051

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/74 (95%), Positives = 72/74 (97%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGL+LSQALTLFTTPVVYLYLDRAHYWY
Sbjct: 972  MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYWY 1031

Query: 61   MNKKEARAARKAAR 74
            M KKEAR ARKAAR
Sbjct: 1032 MRKKEARQARKAAR 1045


>E6UX88.1 E6UX88_VARPD Acriflavin resistance protein
          Length = 1058

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/87 (81%), Positives = 78/87 (89%), Gaps = 2/87 (2%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTMCALLSGLPLMLGHG+GSELRRPLGYAMVGGL+LSQALTLFTTPVVYLYLDRAH+WY
Sbjct: 972  MTTMCALLSGLPLMLGHGSGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHFWY 1031

Query: 61   MNKKEARAARKAARKGGA--APVIESH 85
            + +KEAR ARKAA+  G    PV E+H
Sbjct: 1032 LRRKEARKARKAAKGEGGETPPVAEAH 1058


>A1WES8.1 A1WES8_VEREI Acriflavin resistance protein
          Length = 1051

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/84 (79%), Positives = 72/84 (85%), Gaps = 7/84 (8%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPV+YLYLDRAHYWY
Sbjct: 972  MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVIYLYLDRAHYWY 1031

Query: 61   MNKKEARAARKAARKGGAAPVIES 84
            M +K+++ A       G  P IES
Sbjct: 1032 MGRKKSKHA-------GMIPAIES 1048


>Q1LQU0.1 Q1LQU0_RALME Multidrug efflux system, subunit B
          Length = 1066

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 68/80 (85%), Gaps = 7/80 (8%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTMCALL+GLPLMLGHGAGSELRRPLGYAMVGGLV+SQ LTLF+TPVVYLYLDRAHYWY
Sbjct: 975  MTTMCALLAGLPLMLGHGAGSELRRPLGYAMVGGLVVSQMLTLFSTPVVYLYLDRAHYWY 1034

Query: 61   MNKKEARAARKAARKGGAAP 80
            M        RKAAR GG  P
Sbjct: 1035 MR-------RKAARGGGKPP 1047


>Q89NE0.1 Q89NE0_BRAJA AcrB/AcrD/AcrF family protein
          Length = 1048

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 54/60 (90%)

Query: 1    MTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWY 60
            MTTM ALL G+PLMLGHG G+E+R+PLGYAMVGGL++SQALTLFTTPVVYLYLD  + W+
Sbjct: 964  MTTMAALLGGVPLMLGHGTGAEIRQPLGYAMVGGLIVSQALTLFTTPVVYLYLDELNNWF 1023