BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0006.p         (76 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWG3.1 D8IWG3_HERSS Two component heavy metal response transcr...   145   3e-33
A1WES7.1 A1WES7_VEREI Two component heavy metal response transcr...   144   4e-33
E6UX87.1 E6UX87_VARPD Two component heavy metal response transcr...   130   7e-29
E2XLV0.1 E2XLV0_PSEFL Two component heavy metal response transcr...   114   6e-24
A6V861.1 A6V861_PSEA7 Probable two-component response regulator       113   1e-23

>D8IWG3.1 D8IWG3_HERSS Two component heavy metal response transcription
          regulator protein
          Length = 230

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/75 (89%), Positives = 72/75 (96%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDE KM+EYLCKGLTEQGC VDLAANG+DGQHLAI+HDYDVIVLDVMLPGLDGF
Sbjct: 1  MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          SVLR+LR VK+TPVI
Sbjct: 61 SVLRALRKVKETPVI 75


>A1WES7.1 A1WES7_VEREI Two component heavy metal response transcriptional
          regulator, winged helix family
          Length = 231

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 71/75 (94%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDEHKMAEYL KGL+EQGCTVDLAANGIDGQHLAI HDYDVIVLD MLPGLDGF
Sbjct: 1  MKILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLPGLDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          SVLRSLR +KQTPVI
Sbjct: 61 SVLRSLRILKQTPVI 75


>E6UX87.1 E6UX87_VARPD Two component heavy metal response transcriptional
          regulator, winged helix family
          Length = 235

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 67/75 (89%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDE + A+YL KGLTEQGCTVD A NGIDGQHLA+ HDYDVIVLDVMLPG DGF
Sbjct: 1  MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          +VLR+LR VKQTPVI
Sbjct: 61 AVLRALRAVKQTPVI 75


>E2XLV0.1 E2XLV0_PSEFL Two component heavy metal response transcriptional
          regulator, winged helix family
          Length = 225

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 64/75 (85%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          M+ILIVEDE K A+YL +GLTEQG TVD+A  G++G HLA+++DY VIVLDVMLPGLDGF
Sbjct: 1  MRILIVEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
           VLR+LR  KQTPVI
Sbjct: 61 GVLRALRARKQTPVI 75


>A6V861.1 A6V861_PSEA7 Probable two-component response regulator
          Length = 229

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/75 (72%), Positives = 65/75 (86%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          M++LIVEDE K A+YL +GLTEQG TVDLA NGIDG+HLA+  +YDVIVLDVMLPG+DG+
Sbjct: 1  MRVLIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVMLPGIDGY 60

Query: 61 SVLRSLRTVKQTPVI 75
           VLR+LR  +QTPVI
Sbjct: 61 GVLRALREQRQTPVI 75